Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03773 191 / 3e-63 HSP20-like chaperones superfamily protein (.1.2) AT4G02450 98 / 8e-26 HSP20-like chaperones superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038550 [exp] 220 / 1e-74 AT3G03773 197 / 5e-66 HSP20-like chaperones superfamily protein (.1.2) Potri.002G061500 [exp] 104 / 7e-29 AT4G02450 123 / 4e-35 HSP20-like chaperones superfamily protein (.1.2) Potri.005G199700 [exp] 102 / 5e-28 AT4G02450 127 / 9e-37 HSP20-like chaperones superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010669 [exp] 191 / 3e-63 AT3G03773 223 / 6e-76 HSP20-like chaperones superfamily protein (.1.2) Lus10002623 [exp] 168 / 3e-54 AT3G03773 165 / 2e-53 HSP20-like chaperones superfamily protein (.1.2) Lus10020270 [exp] 175 / 8e-53 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10024119 [exp] 112 / 9e-33 AT3G03773 121 / 2e-36 HSP20-like chaperones superfamily protein (.1.2) Lus10000340 [exp] 111 / 1e-30 AT4G02450 120 / 5e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10026136 [exp] 108 / 2e-29 AT4G02450 122 / 1e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10008680 [exp] 110 / 4e-29 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF04969 [poplar] [flax] CS CS domain
Representative CDS sequence Show only first row Show all	>Potri.013G062600.2 pacid=42812482 polypeptide=Potri.013G062600.2.p locus=Potri.013G062600 ID=Potri.013G062600.2.v4.1 annot-version=v4.1 ATGGGATCAATGAGTCGGCACCCAGAGGTTCTATGGGCTCAAAGATCAGACAAGGTTTACTTGACAATTGCATTACCTGATGCTAGAGACATATCAGTGA AATGTGAAGCTGAAGGGTTATTTAGCTTCTCTGCTGTTGGGGTTCAAGGTGAATCGTTTGATTTCAGTTTGGAACTCTTTGGAAACGTTGTTCCCGAGGG TTGTAAAACTAAGGCTGGGTTGAGGAACATTATATGCTCGATCCAGAAAGAAGAGAAAGGTTGGTGGAAAAGGCTGTTAAAATCTGAAGAGAAACCTGCT CCTTACATTAAGGTGGATTGGAACAAGTGGTGTGATGAGGATGACAACGAGTCAGCTTCTGATGCCTCTGATGACAATAATGCTGCGCATGGAGAAGATG ATGAGAGCAGTGATGATGATGGAATGCTTTATCTTCCTGATCTTGAGAAGGCAAGGGGAAATTGA
AA sequence Show only first row Show all	>Potri.013G062600.2 pacid=42812482 polypeptide=Potri.013G062600.2.p locus=Potri.013G062600 ID=Potri.013G062600.2.v4.1 annot-version=v4.1 MGSMSRHPEVLWAQRSDKVYLTIALPDARDISVKCEAEGLFSFSAVGVQGESFDFSLELFGNVVPEGCKTKAGLRNIICSIQKEEKGWWKRLLKSEEKPA PYIKVDWNKWCDEDDNESASDASDDNNAAHGEDDESSDDDGMLYLPDLEKARGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03773			HSP20-like chaperones superfam...		Potri.013G062600 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	5.65	0.7334
AT4G13800			Protein of unknown function (D...		Potri.001G318700 [exp]	11.40	0.7469
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.001G332100 [exp]	19.20	0.7271
AT2G28680			RmlC-like cupins superfamily p...		Potri.007G047200 [exp]	19.74	0.6900
AT5G38895			RING/U-box superfamily protein...		Potri.010G140300 [exp]	23.74	0.7139
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.004G104000 [exp]	26.49	0.6416
AT5G49320			Protein of unknown function (D...		Potri.010G140400 [exp]	31.87	0.7078
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	37.78	0.6350	PIN7,Pt-PIN1.2
AT3G02430			Protein of unknown function (D...		Potri.013G116300 [exp]	38.18	0.6533
AT3G55390			Uncharacterised protein family...		Potri.010G207000 [exp]	41.82	0.6453

Compare expression of checked genes

Potri.013G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.