Plant FIBer expression Database

Potri.013G062900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36900 304 / 7e-106 ATMEMB11, MEMB11 membrin 11 (.1.2)
AT5G50440 283 / 2e-97 ATMEMB12, MEMB12 membrin 12 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020302
[exp]
372 / 3e-132 AT2G36900 313 / 5e-109 membrin 11 (.1.2)
Lus10005690
[exp]
367 / 1e-130 AT2G36900 313 / 5e-109 membrin 11 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0147 Traffic PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence
>Potri.013G062900.1 pacid=42811062 polypeptide=Potri.013G062900.1.p locus=Potri.013G062900 ID=Potri.013G062900.1.v4.1 annot-version=v4.1
ATGGAAGGAGGAGGAGGGACACTATCGGAAATATACCAGAGTGCGAAGAAGTTGCTAATGAGAGCACAAGATGGGATCGAGAGACTGGAGCGACTGGAGA
ACTCGACTTCTAGTGGAGGATTAGATTCACCTGAGCTATCTTTCGTTGTCAAGAAGGATATCTCTCAGGTTCTTTCTCTTTGTGCCGATATGGATCGTCT
CTGGCGCTCTGTTCAAGCCAAACCTCAACGCGATCTCTGGAGAAGAAAGGTGGAGCTAGTAGCTGAAGAGGCTGGGTCATTGAAAGAGAGTTTGGATAGG
TATTTTGCAAGGAATCAAAGACGGATGAAGGAAGCTCAGGAGAGAGCAGAGTTGCTTGGAAGAGCTAATGGTGATTCAGCTCATGTTTTGAGAATATTCG
ATGAAGAAGCACAAGCAATGCAGTCAGTTCATAATTCAAAAAGAATGCTGGCAGATTCAATATCAACTGGAGCAGCCATTCTTTCCAAATATTCAGAACA
AAGGGAACGCTTAAAGAGGGCACAACGCAAGGCATTGGATGTGCTTAATACAGTGGGGCTCTCCAATGCTGTACTGAGGCTGATCGAGAGGCGCAACCGT
TTCGATAGATGGATCAAATATTTTGGAATGCTTATTACCCTTGTCATCTTGTATTTTCTCGTTAGGTCAAGTGGTTGA
AA sequence
>Potri.013G062900.1 pacid=42811062 polypeptide=Potri.013G062900.1.p locus=Potri.013G062900 ID=Potri.013G062900.1.v4.1 annot-version=v4.1
MEGGGGTLSEIYQSAKKLLMRAQDGIERLERLENSTSSGGLDSPELSFVVKKDISQVLSLCADMDRLWRSVQAKPQRDLWRRKVELVAEEAGSLKESLDR
YFARNQRRMKEAQERAELLGRANGDSAHVLRIFDEEAQAMQSVHNSKRMLADSISTGAAILSKYSEQRERLKRAQRKALDVLNTVGLSNAVLRLIERRNR
FDRWIKYFGMLITLVILYFLVRSSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G36900 ATMEMB11, MEMB1... membrin 11 (.1.2) Potri.013G062900
[exp]
0 1
AT5G40580 PBB2 20S proteasome beta subunit PB... Potri.017G071100
[exp]
1.41 0.9048 PBB1.1
AT2G47470 ATPDI11, ATPDIL... UNFERTILIZED EMBRYO SAC 5, MAT... Potri.014G122800
[exp]
3.46 0.8871
AT5G50850 MAB1 MACCI-BOU, Transketolase famil... Potri.001G061400
[exp]
4.69 0.9036
AT2G44610 RAB6, AtRABH1b,... Ras-related small GTP-binding ... Potri.003G086700
[exp]
5.00 0.8887
AT3G01280 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE D... Potri.008G194900
[exp]
5.91 0.8851 Pt-POR1.1
AT5G19990 ATSUG1, RPT6A regulatory particle triple-A A... Potri.008G144100
[exp]
6.32 0.8842 A1.3
AT1G71780 unknown protein Potri.002G062300
[exp]
8.24 0.8887
AT1G79920 AtHsp70-15 heat shock protein 70-15, Heat... Potri.001G180100
[exp]
12.80 0.8502 Pt-HSP91.2
AT1G53290 Galactosyltransferase family p... Potri.001G392700
[exp]
16.88 0.8894
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Potri.005G146800
[exp]
20.49 0.8785

Potri.013G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.