Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 896 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 447 / 1e-145 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 404 / 1e-129 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 392 / 6e-125 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 300 / 7e-91 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 182 / 3e-47 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 167 / 1e-42 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 161 / 2e-40 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 160 / 3e-40 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G30570 159 / 4e-40 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039000 [exp] 1261 / 0 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 741 / 0 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G333300 [exp] 494 / 5e-164 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G147700 [exp] 493 / 7e-164 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 464 / 2e-152 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 454 / 2e-148 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 175 / 5e-45 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 170 / 2e-43 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.016G126300 [exp] 167 / 7e-43 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005689 [exp] 891 / 0 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 854 / 0 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 672 / 0 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 667 / 0 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035225 [exp] 489 / 6e-162 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 484 / 8e-160 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 462 / 2e-151 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 430 / 4e-139 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 389 / 5e-124 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 314 / 1e-96 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.013G064300.7 pacid=42812721 polypeptide=Potri.013G064300.7.p locus=Potri.013G064300 ID=Potri.013G064300.7.v4.1 annot-version=v4.1 ATGCTCATTTTCTATTCCTTGAGAGCTCTGCAATATCTTCTATGCTTTACCCGTGTGCTGATTCTTTGTACACAACAAATGGCGAAGGCATTTCGATATT CCGCAATTCTACTTTGCGTTGTCCTTGTGCTTTTAATTAGTGGTTCAGAGCAATTACAATCCTCCCAGGGTGAAACCCTTTTGAGAATTCAGCGGCTTTT GAACTATCCATCTTCTCTAAGCAGTTGGAATAGCTCGATTGACTTCTGCAACAGCGAACCAAATGCATCTGTAACTGTAGCATGCTATGAGAAAAGCATA ACGCAGCTGCATATTGTTGGCAACAAGGGAACTCCTCTTTTGCCTGGAAACTTTTCAATCGATTCATTTGTCACAACAGTTGTCGGCCTGCCGACTTTGA AAGTCTTGACATTGGTTTCTCTAGGTCTATGGGGTCCCTTGCCTGGTAAAATTGCGCGTTTGTCTTCATTGGAAATACTTAACATGAGCTCAAATTTCCT ATATGATGCTATCCCTCAAGAGCTTTCATCATTATCTGGCCTCCAATCACTGGGACTTGATGATAACATGTTTGCTGGTAAGGTGCCAAATTGGATCGGT TCACTTCAAGTTTTGTCTGTCTTGAGTCTCAGGAAGAATATGCTCAATGGTTCATTGCCAGATTCATTGAGTACTTTGGAAAATCTTAGAGTTCTAGCAC TTGCACACAACTACTTCAAAGGAGAAGTTCCTGACCTTAGCAGTTTGACAAACCTTCAAGTGCTTGACTTGGAAGATAATGCTTTCGGACCCCAGTTTCC TCAGCTTGGAAACAAGTTGGTTTCTCTTGTGTTGAGCAGGAACAAGTTCAGGGATGGCCTCCCGGCTGAAGTGACCTCCTATTATCAACTTCAAAGGCTA GATCTCTCAAATAATACATTTGTGGGACCATTTCCACAATCATTATTGTCATTGCCATCAGTAACTTACTTGAACATTGCAGATAACAAGTTTACGGGAA TGCTTTTCGAAAACCAGTCTTGCAGTGCTGACCTTGAGTTTGTGGATTTGTCCTCGAATCTTATGACCGGACACATGCCGAATTGTCTTCTGCAAGACTC CAAGAAAAAGGCCTTGTATGCTGGGAACTGTCTCGCAACTGGTGATCAAGACCAACATCCTATTTCCATTTGTCGTAATGAAGCATTAGCTGTTGGGATT TTGCCTCAGCAAAAGAAAAGGAAACCTTCTAAAGCAATTATTGCAATCAGTGTAATAGGAGGGATTGTTGGAGGAATTGCCCTTGTTGGTTTGATTTTCT TGGCCGTGAGAAAGGTGAAATCCGGGAAGACAATCCAGAAATCAACAATTAGATTAATTGCAGAGAATGCATCAACAGGGTACCCTACAAAGTTGCTCTC GGATGCAAGGTATATTTCTCAAACAATGAAGCTAGGAGCACTTGGCCTTCCAGCATATCGTACCTTCTCACTAGAAGAGCTAGAGGAGGCCACAAACAAT TTCGACACATCTGCTTTCATGGGTGAAGGTTCTCAAGGGCAGATATACAGGGGCCGGCTTAAGGATGGTTCCTTTGTCGTCATCAGATGCTTGAAAATGA AACGAAGTCATGGTACCCATAACTTTATGCACCATATAGAGCTCATTTCAAAACTCAGACATCGACATTTGGTCAGTGCTCTTGGACACGGCTTTGAGTA CTACTTGGATGATTCAAGTGTCAGCAGAATATTTCTGGTTTTCGAATATGTACCAAATGGCACGCTAAGAAGCTGGATCTCTGGAGGACATGCCAGGCAA AAAATTCATTGGACACACCGTATAGCTGCTGCAATAGGTGTAGCAAAGGGAATCCAATTTTTGCATACAGGGATTGTGCCTGGTGTATATTCAAATAATC TGAAAATAACAGATGTTTTATTGGATCAGAATCTTGTTGCAAAAATTAGCAGTTATAACCTGCCCTTATTAGCAGAAAACAGGGGAATGGTTGGCCATGG AGCATCTTCTGGTGCATCCAAAGATCTTAGCCTTAGTGCAAGGATAAATCAAGACGAGAAGGTTGATGTTTATGACTTTGGATTAATATTGCTCGAAATC CTTTTGGGGAGATCATTGACCTCTGGGAATGATGTAGATGTTCTACAAGATCAGCTGCAAGCAAGCATTACACGTGATGATGCTGCTCGAAGGAGCATGG TTGATCCAGCAGTGAGAAGGGTATGTTCATATCAATCACTAAAAACAATGATGGAGATCTGCGTCAGGTGTCTGCTCAAGAACCCTGCAGACAGACCTTC AATCGAGGATATTCTGTGGAACTTGCAGTTCGCTGCTCAAGTTCAGGATCCCTGGCGGGGAGACTCCCAGAGCAGTGAAGGGTCTCCAGTCGCAGCTACC CACCAACCGCAATTACATATTACCATTCATTAG
AA sequence Show only first row Show all	>Potri.013G064300.7 pacid=42812721 polypeptide=Potri.013G064300.7.p locus=Potri.013G064300 ID=Potri.013G064300.7.v4.1 annot-version=v4.1 MLIFYSLRALQYLLCFTRVLILCTQQMAKAFRYSAILLCVVLVLLISGSEQLQSSQGETLLRIQRLLNYPSSLSSWNSSIDFCNSEPNASVTVACYEKSI TQLHIVGNKGTPLLPGNFSIDSFVTTVVGLPTLKVLTLVSLGLWGPLPGKIARLSSLEILNMSSNFLYDAIPQELSSLSGLQSLGLDDNMFAGKVPNWIG SLQVLSVLSLRKNMLNGSLPDSLSTLENLRVLALAHNYFKGEVPDLSSLTNLQVLDLEDNAFGPQFPQLGNKLVSLVLSRNKFRDGLPAEVTSYYQLQRL DLSNNTFVGPFPQSLLSLPSVTYLNIADNKFTGMLFENQSCSADLEFVDLSSNLMTGHMPNCLLQDSKKKALYAGNCLATGDQDQHPISICRNEALAVGI LPQQKKRKPSKAIIAISVIGGIVGGIALVGLIFLAVRKVKSGKTIQKSTIRLIAENASTGYPTKLLSDARYISQTMKLGALGLPAYRTFSLEELEEATNN FDTSAFMGEGSQGQIYRGRLKDGSFVVIRCLKMKRSHGTHNFMHHIELISKLRHRHLVSALGHGFEYYLDDSSVSRIFLVFEYVPNGTLRSWISGGHARQ KIHWTHRIAAAIGVAKGIQFLHTGIVPGVYSNNLKITDVLLDQNLVAKISSYNLPLLAENRGMVGHGASSGASKDLSLSARINQDEKVDVYDFGLILLEI LLGRSLTSGNDVDVLQDQLQASITRDDAARRSMVDPAVRRVCSYQSLKTMMEICVRCLLKNPADRPSIEDILWNLQFAAQVQDPWRGDSQSSEGSPVAAT HQPQLHITIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	0	1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	1.73	0.9249
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	4.58	0.8981
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	5.83	0.9053
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Potri.010G003300 [exp]	6.32	0.8657
AT5G39785			Protein of unknown function (D...		Potri.004G126800 [exp]	7.41	0.8952
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	9.48	0.8944	Pt-CPK7.2,CPK14
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	9.94	0.8818
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.014G070900 [exp]	10.39	0.8099
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	12.32	0.8839	Pt-RIC2.2
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	14.96	0.8858

Compare expression of checked genes

Potri.013G064300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.