Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03760 209 / 1e-67 AS2 LBD20 LOB domain-containing protein 20 (.1) AT2G42430 146 / 2e-43 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) AT3G58190 136 / 1e-39 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) AT2G45420 136 / 2e-39 AS2 LBD18, ASL20 LOB domain-containing protein 18 (.1) AT2G42440 134 / 2e-38 AS2 Lateral organ boundaries (LOB) domain family protein (.1) AT4G00210 131 / 9e-38 AS2 LBD31 LOB domain-containing protein 31 (.1) AT4G00220 131 / 1e-37 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1) AT2G31310 126 / 4e-36 AS2 LBD14 LOB domain-containing protein 14 (.1) AT2G45410 124 / 3e-35 AS2 LBD19 LOB domain-containing protein 19 (.1) AT5G06080 122 / 1e-34 AS2 LBD33 LOB domain-containing protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041200 [exp] 146 / 1e-43 AT2G42430 191 / 6e-61 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.014G070400 [exp] 146 / 3e-43 AT2G45420 237 / 2e-78 LOB domain-containing protein 18 (.1) Potri.002G149000 [exp] 145 / 9e-43 AT2G45420 234 / 2e-77 LOB domain-containing protein 18 (.1) Potri.005G221900 [exp] 143 / 2e-42 AT2G42430 209 / 3e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.002G041100 [exp] 142 / 6e-42 AT2G42440 186 / 6e-59 Lateral organ boundaries (LOB) domain family protein (.1) Potri.014G070300 [exp] 132 / 8e-39 AT4G00210 181 / 5e-58 LOB domain-containing protein 31 (.1) Potri.010G200400 [exp] 132 / 4e-38 AT5G06080 152 / 8e-47 LOB domain-containing protein 33 (.1) Potri.002G148900 [exp] 129 / 3e-37 AT4G00210 186 / 2e-59 LOB domain-containing protein 31 (.1) Potri.005G134900 [exp] 116 / 3e-31 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033873 [exp] 141 / 2e-41 AT3G58190 220 / 1e-72 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10000613 [exp] 141 / 2e-41 AT3G58190 215 / 1e-70 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10000707 [exp] 141 / 6e-41 AT2G42430 222 / 2e-72 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10024877 [exp] 139 / 3e-40 AT2G42430 211 / 6e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033872 [exp] 138 / 3e-40 AT2G42430 212 / 6e-69 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10014757 [exp] 135 / 4e-39 AT2G42430 208 / 2e-67 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10004707 [exp] 123 / 6e-35 AT5G06080 154 / 1e-47 LOB domain-containing protein 33 (.1) Lus10009298 [exp] 117 / 4e-32 AT2G45410 193 / 2e-62 LOB domain-containing protein 19 (.1) Lus10028986 [exp] 112 / 4e-31 AT3G11090 185 / 6e-61 LOB domain-containing protein 21 (.1) Lus10016769 [exp] 115 / 7e-31 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.013G064501.1 pacid=42811351 polypeptide=Potri.013G064501.1.p locus=Potri.013G064501 ID=Potri.013G064501.1.v4.1 annot-version=v4.1 ATGACTGAGCCACTCGGCGATGCCATGTCCGAAACTCGAAGAAAGGGAATCGGTAAGCGTGCCACTCCCATGTCAGATGAGTCCCAGCCGGTGTCTGAAC TGGCACCGACCCCGGCATCTCCTTGTGGCGCATGCAAATTTCTGAGGAGGAAATGCATTAGTGGGTGCATATTTGCACCTCACTTTGGTTCCGACCAGGG AGCAGCTCGGTTCGCGGCAGTTCACAAGGTTTTTGGTGCTAGCAATGTGTCCAAGCTCTTGCTGCATATTCCTCTGAACCGAAGGCATGAGGCGATCGTC ACGATATCTTATGAGGCTCAAGCAAGGCTATCCGACCCGGTTTACGGTTGTGTCTCGACCATTCTCGCTTTGCAACAGCAGGTGGCATCACTGCAAGCTG AGCTTTCAGTGGTCCAAACTCAACTGATAAACAGTCGGTTTGCCATGGCAAATGCCCTTCAGCAGCAGCACCATGTTGCAATGCTACAACCAGCCTACTC AAACAATTCCTCAGCTTCCACTAACTTCATCAACATGAGCAGTTTCACCTCCAACTTCGACCTTGTCACTGACACAGCACCATCTTCCCATAGCATGGAG CCTCTCCATATCTCACAGCCCTCCCACGACGAGGAAGAAGATGAAGAGGAGAGTCAGCTTCCGGGAGTAATTTTCGCCAACGAAGTACTTCATCGGAGAT GA
AA sequence Show only first row Show all	>Potri.013G064501.1 pacid=42811351 polypeptide=Potri.013G064501.1.p locus=Potri.013G064501 ID=Potri.013G064501.1.v4.1 annot-version=v4.1 MTEPLGDAMSETRRKGIGKRATPMSDESQPVSELAPTPASPCGACKFLRRKCISGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPLNRRHEAIV TISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQTQLINSRFAMANALQQQHHVAMLQPAYSNNSSASTNFINMSSFTSNFDLVTDTAPSSHSME PLHISQPSHDEEEDEEESQLPGVIFANEVLHRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03760	AS2	LBD20	LOB domain-containing protein ...		Potri.013G064501 [exp]	0	1
					Potri.013G012766 [exp]	5.00	0.5519
					Potri.010G224650 [exp]	8.94	0.6598
					Potri.004G127001 [exp]	9.16	0.5760
AT4G30390			unknown protein		Potri.019G051850 [exp]	9.94	0.6000
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.014G163301 [exp]	12.40	0.6261
AT5G38200			Class I glutamine amidotransfe...		Potri.010G120600 [exp]	14.79	0.6617
AT5G53820			Late embryogenesis abundant pr...		Potri.004G107700 [exp]	15.42	0.5701
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G047800 [exp]	17.26	0.6817
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.018G022000 [exp]	25.37	0.5457
AT3G14470			NB-ARC domain-containing disea...		Potri.001G025400 [exp]	31.46	0.6312

Compare expression of checked genes

Potri.013G064501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.