Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG935
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03750 258 / 1e-83 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G23740 94 / 8e-21 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT2G22740 90 / 2e-19 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 84 / 2e-17 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G77300 81 / 2e-16 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT3G04380 79 / 5e-16 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT1G73100 78 / 1e-15 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT1G76710 77 / 2e-15 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G04050 77 / 3e-15 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G04940 77 / 4e-15 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033000 [exp] 106 / 7e-25 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 105 / 2e-24 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G083100 [exp] 92 / 6e-20 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.013G048100 [exp] 91 / 1e-19 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.005G195400 [exp] 86 / 4e-18 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.009G138600 [exp] 86 / 5e-18 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.002G079100 [exp] 85 / 1e-17 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G182100 [exp] 85 / 1e-17 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G257400 [exp] 83 / 4e-17 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003864 [exp] 254 / 1e-82 AT3G03750 340 / 2e-116 SET domain protein 20 (.1.2) Lus10013623 [exp] 249 / 2e-80 AT3G03750 320 / 3e-108 SET domain protein 20 (.1.2) Lus10016788 [exp] 109 / 9e-26 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 106 / 7e-25 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10011011 [exp] 94 / 9e-21 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 94 / 1e-20 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 94 / 2e-20 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10000967 [exp] 91 / 1e-19 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10028662 [exp] 91 / 2e-19 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10022657 [exp] 86 / 1e-18 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.013G064600.1 pacid=42812075 polypeptide=Potri.013G064600.1.p locus=Potri.013G064600 ID=Potri.013G064600.1.v4.1 annot-version=v4.1 ATGCCCCAATGCCAACAACAAGAACCTGCTGCAGCAGCAGCAAATAAATCAAACAAGAAGGATCCTCCTCTAATCCAATGCGCAGACCTAATCCTGCCAT GGCTAACCCCACTTGAACTAGCCAACATTTCTTCAACCTGCAAAACCCTTTCTCAAATCTCTAAATCCATCACTCTCCAGCGAACCCTCGACGCCTCCAG ATTCTTAGAGAACCACCTTATCCCATTTCTCAACCCCAATAACCAACACCCTTATGCCTATTTCCTCTACACCCCTTCTCAACTCCTTCCCTCCCAATCC CCACTTCGCCAGCCTTGGGGCTCACAACTCGATCGTGACTCTCTGGGTCGACACCATAGTGGCTCAGCTTGCAAATTGAATGAGTCCTGGGAGGTTTTAC GTGGGTGTGATTCGGAATTGGCGACTCCGCGCCGTGTTATGGGTGAGTCAGGGAAGGGTGTGTGTGGGTGTGATTGTGAAGGGTGCGAAGAGGGTGGGAC AGGGTGGGAATTTTGGGGGTTGGAGGAAATGGGGATAATGACCGAGTGTGGACCGGGTTGTGGGTGTGGGTTGGAGTGTAGCAATCGGTTGACTCAGAGA GGGGTTTTGGTGAAGTTGAAGATCGTGAGAGATGGCAAGAAGGCTTGGGGTTTGTTTGCTGGTCAAATGATTTGTCAAGGCCAGTTCATCTGCGAGTATG CTGGTGAACTTTTAACGACTGAAGAAGCAAGAAGGCGGCAACAAATCTATGATGAGCTTGCATCTAGTGGCCAATTCTCTTCTGCTCTCTTGGTCGTGAG AGAGCATCTTCCATCAGGGAAAGCTTGCTTGAGGATAAATATTGATGCCACAAGAACTGGAAATGTTGCGCGATTCATTAACCATTCTTGTGATGGCGGT AATCTAACAACGGTACTAGTGAGACACACAGGATCTTTGCTGCCTCGCCTTTGTTTCTTTGCTTCTAGAAACATAAAAGAAGGTGAAGAGCTCACATTTA GCTATGGGGAAATCAGGGTCAGGTCCAAGGGCTTGCAATGTTTTTGTGGCAGCTCTTGTTGTTTTGGTACCTTGCCTTCAGAACACACTTAA
AA sequence Show only first row Show all	>Potri.013G064600.1 pacid=42812075 polypeptide=Potri.013G064600.1.p locus=Potri.013G064600 ID=Potri.013G064600.1.v4.1 annot-version=v4.1 MPQCQQQEPAAAAANKSNKKDPPLIQCADLILPWLTPLELANISSTCKTLSQISKSITLQRTLDASRFLENHLIPFLNPNNQHPYAYFLYTPSQLLPSQS PLRQPWGSQLDRDSLGRHHSGSACKLNESWEVLRGCDSELATPRRVMGESGKGVCGCDCEGCEEGGTGWEFWGLEEMGIMTECGPGCGCGLECSNRLTQR GVLVKLKIVRDGKKAWGLFAGQMICQGQFICEYAGELLTTEEARRRQQIYDELASSGQFSSALLVVREHLPSGKACLRINIDATRTGNVARFINHSCDGG NLTTVLVRHTGSLLPRLCFFASRNIKEGEELTFSYGEIRVRSKGLQCFCGSSCCFGTLPSEHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Potri.013G064600 [exp]	0	1	SDG935
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	1.73	0.8428
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Potri.010G004600 [exp]	2.44	0.8846
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.006G069500 [exp]	4.24	0.8147
AT1G26800			RING/U-box superfamily protein...		Potri.008G087200 [exp]	4.79	0.7820
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	4.89	0.8511
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.016G084100 [exp]	5.65	0.8408
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.014G116800 [exp]	6.70	0.8385	GOLS2.1
AT3G15350			Core-2/I-branching beta-1,6-N-...		Potri.001G399500 [exp]	8.36	0.8167
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.001G466066 [exp]	14.69	0.8165
AT3G10110		MEE67	maternal effect embryo arrest ...		Potri.001G281200 [exp]	18.97	0.7863

Compare expression of checked genes

Potri.013G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.