Plant FIBer expression Database

Potri.013G064700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35220 766 / 0 EGY1 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1)
AT5G35210 247 / 1e-70 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
AT5G05740 155 / 7e-41 ATEGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
AT1G17870 111 / 1e-25 ATEGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G066500
[exp]
154 / 3e-40 AT5G05740 610 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Potri.001G289700
[exp]
117 / 2e-27 AT1G17870 755 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020304
[exp]
798 / 0 AT5G35220 781 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1)
Lus10005688
[exp]
790 / 0 AT5G35220 776 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1)
Lus10011873
[exp]
158 / 7e-42 AT5G05740 648 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Lus10022806
[exp]
149 / 1e-37 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Lus10006140
[exp]
104 / 2e-23 AT1G17870 801 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF02163 Peptidase_M50 Peptidase family M50
Representative CDS sequence
>Potri.013G064700.1 pacid=42811465 polypeptide=Potri.013G064700.1.p locus=Potri.013G064700 ID=Potri.013G064700.1.v4.1 annot-version=v4.1
ATGGGAACTCTGACGAGCTCTAGTTTTAGCACAGTGAATTTGAAGCTGTGTTCAGATCTTATAGTCAAAGATTTCAGGGACAGAACTCAGCTCAAGAAAT
GGAAGAAACAGAGCGCTTTATGCTTTTCGTGTAAAGGAGGAATTTTAAAGAGAGAGGCTTGTAATTTTAGTAAAATTAGGTGTTTTAGTGTTAATAATAA
TAATAATAATCATCATCATGATAGTGAAAAAGATGTAGTAGATAATGGTAGTGATAGTGAGAATGATGATAAATATTCAAATGTGAAAGCGGCGTTGTCT
GAAGAGAAAGAAGAGAGGAGCAGCACTGAGTTTGGTTCGGATAAGGCACAAGCTTCTGTTTCTTCAAGGCCACCAACCATATCTCCAGTTGGACCAGCTT
ACAATAATTTCCAAGTAGACTCTTTTAAACTGATGGAGCTTCTTGGACCTGAAAAGGTTGATCCAGCAGATGTAAAGCTAATTAAGGACAAGCTTTTTGG
TTATTCAACCTTCTGGGTAACAAAGGAAGAGCCATTTGGAGACCTTGGTGAGGGCATTCTTTTCCTAGGAAATTTGAGGGGAAACAGAGAAGATGTTTTT
GCCAAACTGCTGAGTCGGCTGGCTGAGGCCACTGGTGATAAATACAATCTGTTTATGGTGGAAGAACCCAATTCAGATGCACCAGACCCTCGTGGTGGAC
CACGTGTTAGTTTTGGATTACTACGGAAAGAGGTATCAGAGCCAGGGCCAACAACACTTTGGCAATATGTGATTGCCCTCTTGTTATTCCTTTTAACTAC
TGGATCTTCTGTGGAGTTAGGGATTGCATCTCAGATCAATCGCCTTCCTCCAGAGGTAGTAAAGTACTTCACAGATCCAAATGCTGTTGAACCACCAGAT
ATGGAGCTGTTGTTCCCATTTGTGGATTCTGCTTTGCCTTTAGCTTATGGTGTTTTGGGGATTCTTTTGTTTCATGAAGTGGGGCACTTTCTTGTTGCTT
TCCCGAAGAAAGTAAAACTAAGCATTCCATTCTGCATACCTAACATTACTCTTGGAAGCTTTGGTGCAATCACTCAGTTCAAATCTATTATTCCTGATCG
GAGTACAAAAGTTGACATTTCCCTTGCCGGACCATTTGCTGGTGCTGCTCTCTCTTTCTCGATGTTTGCTGTTGGTCTGCTGCTTTCATCAAATCCAGCT
GCTGCTGGAGATTTGGTACAAGTTCCAAGCATGCTGTTTCAAGGCTCTTTGCTTCTTGGACTAATTAGTAGAGCCATTCTTGGTTATGCAGCACTGCATG
CTTCAACGGTTTCCATTCATCCTCTAGTGATTGCAGGCTGGTGTGGATTAACCACAACAGCTTTTAATATGCTTCCAGTAGGGTGCCTTGATGGTGGAAG
AGCTGTTCAGGGTGCTTTTGGGAAAGGTGCACTAATTGGGTTTGGCTTGACAACTTACACATTGCTTGGTTTAGGAGTGCTTGGCGGGCCATTGTCACTT
CCCTGGGGGATATACGTCTTGATATGCCAGAGGGCACCAGAAAAACCATGCCTGAATGACGTGACGGAAGTTGGAACATGGAGGAAAGCAGCTGTTACAG
CGGCCATTTTCCTTGTTGCCTTGACGCTTCTTCCAGTATGGGATGAGCTTGCAGAAGAGCTGGGTATAGGTCTTGTTAGCACATTTTGA
AA sequence
>Potri.013G064700.1 pacid=42811465 polypeptide=Potri.013G064700.1.p locus=Potri.013G064700 ID=Potri.013G064700.1.v4.1 annot-version=v4.1
MGTLTSSSFSTVNLKLCSDLIVKDFRDRTQLKKWKKQSALCFSCKGGILKREACNFSKIRCFSVNNNNNNHHHDSEKDVVDNGSDSENDDKYSNVKAALS
EEKEERSSTEFGSDKAQASVSSRPPTISPVGPAYNNFQVDSFKLMELLGPEKVDPADVKLIKDKLFGYSTFWVTKEEPFGDLGEGILFLGNLRGNREDVF
AKLLSRLAEATGDKYNLFMVEEPNSDAPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTTGSSVELGIASQINRLPPEVVKYFTDPNAVEPPD
MELLFPFVDSALPLAYGVLGILLFHEVGHFLVAFPKKVKLSIPFCIPNITLGSFGAITQFKSIIPDRSTKVDISLAGPFAGAALSFSMFAVGLLLSSNPA
AAGDLVQVPSMLFQGSLLLGLISRAILGYAALHASTVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKGALIGFGLTTYTLLGLGVLGGPLSL
PWGIYVLICQRAPEKPCLNDVTEVGTWRKAAVTAAIFLVALTLLPVWDELAEELGIGLVSTF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G35220 EGY1 ETHYLENE-DEPENDENT GRAVITROPIS... Potri.013G064700
[exp]
0 1
AT1G14270 CAAX amino terminal protease f... Potri.008G147600
[exp]
1.41 0.9753
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.018G106400
[exp]
1.73 0.9740
AT3G08010 ATAB2 RNA binding (.1) Potri.009G059600
[exp]
2.82 0.9751
AT4G36910 CBSX1, CDCP2, L... LOSS OF THE TIMING OF ET AND J... Potri.007G046400
[exp]
3.16 0.9723
AT3G11210 SGNH hydrolase-type esterase s... Potri.006G100300
[exp]
4.89 0.9740 CPRD49.3
AT3G10350 P-loop containing nucleoside t... Potri.010G225100
[exp]
7.07 0.9676
AT2G02740 WHY3, ATWHY3, P... PLASTID TRANSCRIPTIONALLY ACTI... Potri.008G149100
[exp]
7.34 0.9611
AT4G37040 MAP1D methionine aminopeptidase 1D (... Potri.005G137400
[exp]
10.81 0.9639 MAP1.2
AT2G36990 SIG6, SIGF, ATS... SIGMA FACTOR 6, RNApolymerase ... Potri.006G125700
[exp]
11.22 0.9630 SIGF.1
AT1G08540 ATSIG1, SIG1, S... SIGMA FACTOR B, RNA POLYMERASE... Potri.013G070500
[exp]
13.19 0.9701 Pt-SIGB.2

Potri.013G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.