Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40990 374 / 5e-129 GLIP1 GDSL lipase 1 (.1) AT3G14225 368 / 2e-126 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53940 348 / 5e-118 GLIP2 GDSL-motif lipase 2 (.1) AT1G53990 344 / 3e-117 GLIP3 GDSL-motif lipase 3 (.1) AT1G53920 344 / 5e-117 GLIP5 GDSL-motif lipase 5 (.1) AT1G54030 208 / 2e-63 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71120 198 / 3e-60 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT5G15720 189 / 1e-56 GLIP7 GDSL-motif lipase 7 (.1) AT1G54010 188 / 2e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14220 187 / 3e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071400 [exp] 485 / 8e-173 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.017G136601 [exp] 434 / 5e-152 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G134701 [exp] 431 / 2e-151 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G136501 [exp] 425 / 1e-148 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G137000 [exp] 423 / 6e-148 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.003G071500 [exp] 410 / 5e-143 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.017G134601 [exp] 405 / 1e-141 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.017G134350 [exp] 380 / 1e-131 AT5G40990 300 / 6e-100 GDSL lipase 1 (.1) Potri.004G084366 [exp] 368 / 1e-126 AT5G40990 289 / 2e-95 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 352 / 1e-119 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10037447 [exp] 336 / 2e-113 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10005236 [exp] 189 / 2e-56 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 188 / 4e-56 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 181 / 2e-53 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10037598 [exp] 175 / 2e-51 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 172 / 3e-50 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10040791 [exp] 169 / 4e-49 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10005238 [exp] 169 / 4e-49 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 174 / 7e-49 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.013G065100.1 pacid=42812544 polypeptide=Potri.013G065100.1.p locus=Potri.013G065100 ID=Potri.013G065100.1.v4.1 annot-version=v4.1 ATGGAAAATTCAAGGTCTGGTTTTTATTTCTTGGTTCTTTGTTGTGCTAGCCTTCTCTTCCCAACATGCTGCAGCAGTAAGCGTATTCCCTTGTTTATAT TTGGAGACTCATTTTTTGAAGCTGGAAATAATAACTATATCAGAAATGCATTTGGCCGGGCAAACTTCTGGCCTTATGGTGAAACCTTCTTCAAGTATCC TACTGGGAGATTTTCGGACGGTCGAGTAATTCCAGATTTTATTGCTGAGTATGCAAAGTTGCCATTCATTCCTCCATATCTGCAACCTGGCAATCACCAG ATTACAGATGGGGTGAACTTTGCATCAGGAGCAGCTGGTGCTCTAGCTCAAACCAGACCTGCTGGATCGGTTATAGACCTTAATACGCAAGCAATTTATT TCAAGAACGTGGAGAGGCAGATAAGTCAGAAACTGGGGGATAAAGAAACTAAGAAATTGCTGTCTAAGGCTATCTACATGTTCAACATCGGTAGCAATGA CTACGTAGCACCTTTCACAACAAACTCCAGTTTGCTCCAGGCCTACTCCAGAAAGGAGTACGTCGGAATGGTTATCGGCAATACAACAACTGTGATCAAA GAAATATATAGGAATGGAGGAAGGAAATTCGTGTTTGTCAGCATGGGTCCTTTGGGTTGTTTACCATATCTGAGAGCATCAAACAAGAATGGCACAGGTG GTTGCATGGATGAAGTCACGGTGTTTTCAAAACTACACAATAGCGCACTCATTGAAGCCCTCAAGGAGCTCCAGACACAGCTTCAAGGGTTTAAATACGC TTATTTTGATTTCTACACTTCATTAAGTGAAAGAATCAAGCGCCATTCAAAATATGGTTTTGAGAAGGGGAAGGTGGCGTGTTGTGGCAGTGGTCCATAC AGAGGAATCTTGAGTTGCGGCGGAAGGGGAGCAGAAGAGTACCAATTATGTGACAATCCTAGCGACTATTTGTTCTTTGATGGTGGTCATCTCACCGAGA AAGCCAACAATCAACTTGCAAAGTTGATGTGGAGTGGGAATTCTAATGTCATATGGCCTTACAATCTTAAAACATTATTCCAGGAGTAG
AA sequence Show only first row Show all	>Potri.013G065100.1 pacid=42812544 polypeptide=Potri.013G065100.1.p locus=Potri.013G065100 ID=Potri.013G065100.1.v4.1 annot-version=v4.1 MENSRSGFYFLVLCCASLLFPTCCSSKRIPLFIFGDSFFEAGNNNYIRNAFGRANFWPYGETFFKYPTGRFSDGRVIPDFIAEYAKLPFIPPYLQPGNHQ ITDGVNFASGAAGALAQTRPAGSVIDLNTQAIYFKNVERQISQKLGDKETKKLLSKAIYMFNIGSNDYVAPFTTNSSLLQAYSRKEYVGMVIGNTTTVIK EIYRNGGRKFVFVSMGPLGCLPYLRASNKNGTGGCMDEVTVFSKLHNSALIEALKELQTQLQGFKYAYFDFYTSLSERIKRHSKYGFEKGKVACCGSGPY RGILSCGGRGAEEYQLCDNPSDYLFFDGGHLTEKANNQLAKLMWSGNSNVIWPYNLKTLFQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.013G065100 [exp]	0	1
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G252200 [exp]	1.00	0.8427
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G066200 [exp]	3.00	0.8056
					Potri.007G103500 [exp]	4.00	0.7510
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	5.29	0.8033
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.006G234200 [exp]	5.83	0.7239
AT2G01300			unknown protein		Potri.004G093000 [exp]	7.34	0.7201
AT1G32928			unknown protein		Potri.011G151600 [exp]	11.53	0.7533
AT3G12830			SAUR-like auxin-responsive pro...		Potri.007G067800 [exp]	12.80	0.6304
					Potri.010G072501 [exp]	13.78	0.7486
AT1G43760			DNAse I-like superfamily prote...		Potri.005G151275 [exp]	14.45	0.7486

Compare expression of checked genes

Potri.013G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.