Plant FIBer expression Database

Potri.013G065401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32030 46 / 3e-06 B3 Domain of unknown function (DUF313) (.1)
AT2G31720 45 / 9e-06 B3 Domain of unknown function (DUF313) (.1)
AT2G27410 44 / 3e-05 B3 Domain of unknown function (DUF313) (.1)
AT3G24850 43 / 4e-05 B3 Domain of unknown function (DUF313) (.1)
AT2G32645 42 / 5e-05 Domain of unknown function (DUF313) (.1)
AT2G18810 42 / 6e-05 Domain of unknown function (DUF313) (.1)
AT5G24050 41 / 0.0002 B3 Domain of unknown function (DUF313) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G076500
[exp]
142 / 2e-41 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1)
Potri.011G139000
[exp]
124 / 3e-34 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1)
Potri.013G031600
[exp]
115 / 1e-30 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1)
Potri.015G014200
[exp]
76 / 1e-16 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1)
Potri.015G014700
[exp]
75 / 4e-16 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000815
[exp]
69 / 4e-14 AT2G27410 68 / 9e-13 Domain of unknown function (DUF313) (.1)
Lus10027284
[exp]
59 / 2e-10 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1)
Lus10030996
[exp]
57 / 6e-10 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1)
Lus10027272
[exp]
54 / 4e-09 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1)
Lus10038980
[exp]
51 / 8e-08 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1)
Lus10027286
[exp]
45 / 9e-06 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1)
Lus10020591
[exp]
41 / 0.0001 AT2G32645 50 / 9e-08 Domain of unknown function (DUF313) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0405 DNA_b-psBarrel PF03754 DUF313 Domain of unknown function (DUF313)
Representative CDS sequence
>Potri.013G065401.1 pacid=42811157 polypeptide=Potri.013G065401.1.p locus=Potri.013G065401 ID=Potri.013G065401.1.v4.1 annot-version=v4.1
ATGAGGTCGACAAGCAAACGAAGGAAGGGTGACTCAAGGGCACTGGACTTGGGTTTTGATTTCTCTGATGAAATAAAAGCTCTAATCGGAGAAGATGGAG
ATAAGGATTTCAAGTTAAGGATAAGGAAAAAGTTGTACCAAACTGATACGAGTGCACACCATGATCGTTTCACAATGCCTTGTAGACAAATTAATGAATG
CGAAAGTCTTTTAATTGGTGATGAGAAGACGACTATCTGTCAAGGCGATGGCATAGGAGTAACATTGGTAGAACTGGGTCTTGGTGATGAAAAAGATAGC
ACGTTCACCAGTCAACTGAGGCTGAAGCAGTGGAACATGAAGAACAGCAGTTCCTATGCGCTAAGAAGTAGCTGGAATGACGTTATGGTTAGGAATGTGG
GAGCGCTCCATCAAGATGACTATGTGCAGATTTATTCCTTTAGGCGCAACGAGGAACTATGGTTCGTCCTCATCAAGGAGTCTGATCATGAAGAAGGCCG
CACAGATGGTGTCTTTGGAAGGACTAGTACTCAAGGGGAATGA
AA sequence
>Potri.013G065401.1 pacid=42811157 polypeptide=Potri.013G065401.1.p locus=Potri.013G065401 ID=Potri.013G065401.1.v4.1 annot-version=v4.1
MRSTSKRRKGDSRALDLGFDFSDEIKALIGEDGDKDFKLRIRKKLYQTDTSAHHDRFTMPCRQINECESLLIGDEKTTICQGDGIGVTLVELGLGDEKDS
TFTSQLRLKQWNMKNSSSYALRSSWNDVMVRNVGALHQDDYVQIYSFRRNEELWFVLIKESDHEEGRTDGVFGRTSTQGE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24670 B3 Domain of unknown function (DU... Potri.013G065401
[exp]
0 1
AT1G29660 GDSL-like Lipase/Acylhydrolase... Potri.012G060700
[exp]
12.32 0.5944
AT4G01960 unknown protein Potri.002G192700
[exp]
13.41 0.5746
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Potri.007G099000
[exp]
13.63 0.5920
AT5G12060 Plant self-incompatibility pro... Potri.006G170200
[exp]
16.43 0.5506
AT5G12180 CPK17 calcium-dependent protein kina... Potri.001G274700
[exp]
21.63 0.5558
AT5G06990 Protein of unknown function, D... Potri.003G193700
[exp]
22.80 0.5038
AT3G43860 ATGH9A4 glycosyl hydrolase 9A4 (.1) Potri.006G219700
[exp]
28.46 0.5469
AT1G34065 SAMC2 S-adenosylmethionine carrier 2... Potri.002G063901
[exp]
32.98 0.5228
Potri.011G082050
[exp]
49.07 0.5136
AT1G15190 Fasciclin-like arabinogalactan... Potri.019G002300
[exp]
53.44 0.5459

Potri.013G065401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.