Plant FIBer expression Database

Potri.013G065600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17900 392 / 7e-134 microfibrillar-associated protein-related (.1)
AT4G08580 390 / 3e-133 microfibrillar-associated protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G039900
[exp]
437 / 1e-151 AT5G17900 356 / 6e-120 microfibrillar-associated protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020319
[exp]
421 / 4e-145 AT4G08580 511 / 1e-180 microfibrillar-associated protein-related (.1)
Lus10020321
[exp]
411 / 3e-143 AT4G08580 390 / 2e-135 microfibrillar-associated protein-related (.1)
Lus10005672
[exp]
406 / 3e-139 AT5G17900 505 / 2e-178 microfibrillar-associated protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06991 MFAP1 Microfibril-associated/Pre-mRNA processing
Representative CDS sequence
>Potri.013G065600.1 pacid=42812617 polypeptide=Potri.013G065600.1.p locus=Potri.013G065600 ID=Potri.013G065600.1.v4.1 annot-version=v4.1
ATGTCGGTTACAGCGGGTGTTAGTGATACAGCTTTAGCTGTTAGAGATAAACTTAGAGGTAAAATTGGACAGACCAAGGTTAAAAGGTACTGGCCTGGCA
AAGCCCCTGAGTGGGCTGATGATGCTGATGAAGATGGAGATATTAGGATGGCGAGGGCTGCTGCCTTGGATAAAGCTTTTCCTATTCGTGATGATTCCTA
TGATGTTGCTGCGTCGAAAGATGATCCCAGGCTGCGTCGTTTGGCTGAGAGCAGGATTGATAATCGTGATGAAGTGAGGGCGGATCATAGGAGGATTCGC
CAGGCTGAGATTATTTCGACGGAAGAGGAGGAGATGCGGAGGCAAGAATGGGCTGATATGGAGGAAGAGGATGAGGATGCATTGGAGGAAAGGAGGAGAA
GGATTAAGGAGAAGTTGCGCCATAGGGAGCAAGAGGAGGCTGTGCTTCTTCCCATAGAGGAGGAGGAGGAAGTGGAGGAAGAGGAAGAAGAGGAGTCTGA
GTACGAGACTGATTCTGAAGAGGAAATGACAGGAATGGCTATGGTGAAGCCTGTTTTTGTGCCCAAGTCGGAAAGAGATACTATAGCTGAGCGTGAGCGG
CTTGAGGCTGAAGAACAAGCTCTTGAGGAAAAGGTGAGGAGGAAATTGGAGCAGAGGAAGGTGGAGACGAAGCAAATATTGGTTGAGGAGATACAGAAAG
AGGAGTTGATTCAGAAGAATCTGGAGACGGAGGCAAATATTGCTGATGTGGATACTGATGATGAAATTAATGAGGCAGAGGAGTACGAGGCTTGGAAGGT
CAGAGAAATTGCAAGGATTAAAAGGGATAGAGAGGCCCGTGAGGCAATGTTGAAGGAGAGAGAAGAGATTGAGAGGGTGAGGAATATGACCGAGGAAGAG
AGGAGAGAGTGGGAGAGGAAGAATCCAAAACCTGCTCCACCATCGAAGCAGAAGTGGAGGTTTATGCAGAAATATTACCACAAGGGTGCTTTCTTCCAGG
ATCAGCCTGATGACCGGGCAGCAACTGCCGGAACAGATGACATTTTCAGACGTGATTTCTCATCTCCGACTGGAGAAGATAGGATGGATAAATCCATATT
GCCCAAGGTTATGCAAGTCAAACACTTTGGTCGCAGTGGACGAACGAAATGGACCCATCTTGTCAATGAGGATACGACTGATTGGAACAATCCGTGGACA
TTCAATGATCCTCTGCGGGCAAAGTACAATGCAAAAATGGCTGGAATGAGTGCTGCTATAGATAAACCCAAAGGAAGCAAAAAGTTGAAGGATTGGGAAT
CCCGGTAA
AA sequence
>Potri.013G065600.1 pacid=42812617 polypeptide=Potri.013G065600.1.p locus=Potri.013G065600 ID=Potri.013G065600.1.v4.1 annot-version=v4.1
MSVTAGVSDTALAVRDKLRGKIGQTKVKRYWPGKAPEWADDADEDGDIRMARAAALDKAFPIRDDSYDVAASKDDPRLRRLAESRIDNRDEVRADHRRIR
QAEIISTEEEEMRRQEWADMEEEDEDALEERRRRIKEKLRHREQEEAVLLPIEEEEEVEEEEEEESEYETDSEEEMTGMAMVKPVFVPKSERDTIAERER
LEAEEQALEEKVRRKLEQRKVETKQILVEEIQKEELIQKNLETEANIADVDTDDEINEAEEYEAWKVREIARIKRDREAREAMLKEREEIERVRNMTEEE
RREWERKNPKPAPPSKQKWRFMQKYYHKGAFFQDQPDDRAATAGTDDIFRRDFSSPTGEDRMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWT
FNDPLRAKYNAKMAGMSAAIDKPKGSKKLKDWESR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17900 microfibrillar-associated prot... Potri.013G065600
[exp]
0 1
AT1G30480 DRT111 DNA-DAMAGE-REPAIR/TOLERATION P... Potri.011G098100
[exp]
1.00 0.9171 DRT111.1
AT2G30120 unknown protein Potri.001G281400
[exp]
2.44 0.9028
AT1G74260 PUR4 purine biosynthesis 4 (.1) Potri.008G058600
[exp]
4.00 0.8995
AT3G42170 BED zinc finger ;hAT family di... Potri.004G126780
[exp]
4.24 0.8971
AT5G23340 RNI-like superfamily protein (... Potri.007G075600
[exp]
6.32 0.8848
AT5G07900 Mitochondrial transcription te... Potri.001G034500
[exp]
6.70 0.8985
AT1G52080 AR791 actin binding protein family (... Potri.003G047200
[exp]
7.00 0.8962
AT1G09770 MYB ATCDC5, AtMYBCD... ARABIDOPSIS THALIANA MYB DOMAI... Potri.013G046300
[exp]
8.06 0.8393
AT2G48100 C2H2ZnF Exonuclease family protein (.1... Potri.002G215700
[exp]
8.12 0.8710
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283200
[exp]
8.77 0.8842

Potri.013G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.