Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17860 420 / 1e-140 CAX7 calcium exchanger 7 (.1) AT1G54115 346 / 3e-111 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 342 / 1e-109 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT5G17850 338 / 2e-109 Sodium/calcium exchanger family protein (.1) AT1G08960 139 / 5e-35 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040200 [exp] 703 / 0 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.013G065900 [exp] 409 / 1e-136 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 323 / 6e-104 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.003G066900 [exp] 319 / 9e-101 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 300 / 2e-93 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 137 / 2e-34 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001330 [exp] 495 / 3e-170 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013635 [exp] 491 / 9e-169 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10013634 [exp] 354 / 4e-115 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 331 / 9e-106 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10037681 [exp] 318 / 1e-100 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 317 / 2e-94 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10015668 [exp] 226 / 2e-68 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10020318 [exp] 227 / 6e-66 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10005673 [exp] 222 / 8e-66 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10029938 [exp] 138 / 4e-34 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.013G065800.1 pacid=42811296 polypeptide=Potri.013G065800.1.p locus=Potri.013G065800 ID=Potri.013G065800.1.v4.1 annot-version=v4.1 ATGGCCATTTTCAGTGCCAAGCCCAGGAAAAGCACTATTTTCCTTAACATCTCCTTCCTCTTCCTCTTCTTGTTCTATATTGCAACCTCATATTTTCCTG ACCAATCCAATGAACCAGAAGTCACCACAAAACATTCTTTAGTGCTTCAAGAAGAATTGACCAAAACTGATGGTTGCAGCCGAATTCATGACTACACAGA TTACAAATCCAAGTGTGTGTACATCAAGTCTAATATTGGGTGCAGGTCTAAAGGGTATATAAACTATCTTCAAATCTTTTACTGTACTTGTGGTAAATTT TCTATGCTTGGCCACGTTATGCTGTTACTATGGCTGGCTGTTCTGTTCTATCTGTTAGGCAACACAGCAGCAGATTACTTCTGTCCCTCCTTGGAAAGCC TGTCCAAACTCTTGAAGCTTTCTCCAACTATTGCTGGTGTCACCCTTCTTTCGCTTGGCAATGGCGCCCCTGATGTTTTCGCTAGTATTGTTTCCTTCAC CAGGTCTAGCAATGGTGATGTTGGCCTGAATAGTATTTTGGGTGGGGCTTTTTTCGTGTCTAGTGTGGTGGTTGGTGTTATAAGTTTATTGACTAGTCCC CGCCAAATTTCGGTTGATAAGTGTAGCTTCATCAGAGATGTCTGCTTCTTTCTGTTCTCTCTATGTTGTCTTCTCTTGATTATTCTTGTTGGAAAAATCT CCTTGTGGGGTGCAATTTCTTTTCTTGCTATCTACTTGGGTTATGTATCTGTGGTTTGCATCATGCACTTTCAGTACAGAAAAAAGAATCATTTAACTGG AGATGGCAACCAGGAGGAATTTTTAGAGAGGGGTATACCATTACTCGGTTATGTTGATGATGAAAAACCAATTTTGGTGGACAAAACCACTGATGAAGAT CAACAAAGCTCATTGATTTTTTGTAATCTCGATTCATCCTTTTGTTATTACTTGGGTAGGCTTCTGTATGTTTTGGAATTTCCTCTGTACATCCCTAGAA GACTGACTATACCTGTGGTTAGTGAGGAGAGATGGTCAAGGCCATATGGAGTTGTTTCCGTGGCATTGGCACCAATTCTATTGGCAGCACTGTGCACCTC CCAAAGGGAAAAGGAGTTTGGCTCTAGAAGCAGCCTAGTAACCTATATGACATCAGGATTGATTGGCATGGTTCTTGGCAATCTTGCATATGTGACAACG AAGAAGTCTAGCCCACCGAAGAAATCCTTGTTCCCTTGGCTTGCTGGTGGGTTTCTGATGAGTGTAACTTGGTCATATATTATTGCTGAAGAATTGGTCT CTTTATTGATTTCACTAGGGTATATACTCGGGATTAACCCTTCAGTTCTTGGATTGACTGTCCTGGCTTGGGGCAACTCCCTCGGAGATTTGATAGCAAA TGTTGCCATGGCAGTAAATGGTGGGGCAGATGGGGTCCAAATCGCCATATCAGGCTGCTATGCTGGTCCCATGTTCAATACGTTGCTGGGTTTGGGCATT TCACTGATCATCTCATCTGGGTCCAAATATCCCTCTTCATTTGTCATCCCAAAAGACCCTTCTCTCTACGAGACTCTAGGGTTCTTGATAGGGGGCTTGC TCTGGGCCCTTGTGATCTTGCCGAGGAAGAACATGAGGTTAGATAGGTCTCTCGGGATTGGTCTCTTGGCTATATATCTCTGCTTTCTGTCTTTGAGGCT GGCCAGGTCTCTTGGTCTCTTGAAACTCCATGGGGTTTCTTAG
AA sequence Show only first row Show all	>Potri.013G065800.1 pacid=42811296 polypeptide=Potri.013G065800.1.p locus=Potri.013G065800 ID=Potri.013G065800.1.v4.1 annot-version=v4.1 MAIFSAKPRKSTIFLNISFLFLFLFYIATSYFPDQSNEPEVTTKHSLVLQEELTKTDGCSRIHDYTDYKSKCVYIKSNIGCRSKGYINYLQIFYCTCGKF SMLGHVMLLLWLAVLFYLLGNTAADYFCPSLESLSKLLKLSPTIAGVTLLSLGNGAPDVFASIVSFTRSSNGDVGLNSILGGAFFVSSVVVGVISLLTSP RQISVDKCSFIRDVCFFLFSLCCLLLIILVGKISLWGAISFLAIYLGYVSVVCIMHFQYRKKNHLTGDGNQEEFLERGIPLLGYVDDEKPILVDKTTDED QQSSLIFCNLDSSFCYYLGRLLYVLEFPLYIPRRLTIPVVSEERWSRPYGVVSVALAPILLAALCTSQREKEFGSRSSLVTYMTSGLIGMVLGNLAYVTT KKSSPPKKSLFPWLAGGFLMSVTWSYIIAEELVSLLISLGYILGINPSVLGLTVLAWGNSLGDLIANVAMAVNGGADGVQIAISGCYAGPMFNTLLGLGI SLIISSGSKYPSSFVIPKDPSLYETLGFLIGGLLWALVILPRKNMRLDRSLGIGLLAIYLCFLSLRLARSLGLLKLHGVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17860		CAX7	calcium exchanger 7 (.1)		Potri.013G065800 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.001G139600 [exp]	7.07	0.8845
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.002G170900 [exp]	7.54	0.9131
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	8.00	0.9123
AT5G57610			Protein kinase superfamily pro...		Potri.018G095800 [exp]	9.16	0.8695
AT1G68570			Major facilitator superfamily ...		Potri.010G126300 [exp]	11.87	0.8676
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	12.48	0.9099
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	13.41	0.9121
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032500 [exp]	16.97	0.8909
AT4G16447			unknown protein		Potri.016G009200 [exp]	17.20	0.8727
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Potri.002G042200 [exp]	18.52	0.8668

Compare expression of checked genes

Potri.013G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.