Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17850 507 / 4e-175 Sodium/calcium exchanger family protein (.1) AT5G17860 431 / 3e-145 CAX7 calcium exchanger 7 (.1) AT1G54115 402 / 7e-133 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 389 / 5e-128 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G08960 182 / 2e-50 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040301 [exp] 691 / 0 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 455 / 2e-154 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 427 / 1e-143 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 370 / 2e-120 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 364 / 4e-118 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 174 / 1e-47 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013634 [exp] 587 / 0 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 557 / 0 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10020318 [exp] 452 / 1e-152 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10001330 [exp] 443 / 7e-150 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013635 [exp] 432 / 7e-146 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10037681 [exp] 370 / 2e-120 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 371 / 5e-113 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10005673 [exp] 333 / 2e-108 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10015668 [exp] 246 / 4e-76 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10029938 [exp] 189 / 2e-51 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.013G065900.3 pacid=42811602 polypeptide=Potri.013G065900.3.p locus=Potri.013G065900 ID=Potri.013G065900.3.v4.1 annot-version=v4.1 ATGGTCTCCATATCTGAGCACAAGAAATATGTCTTGTTCTTAAATATCTCTTTTCTCTTGGTGGCATGTGTTTTCTTGATCATGCAATTCAGTTCTGCTG GGTTTCTTGTGCTGGGGAGTTCTCAATCTTTCAAGGAAAATGATCAACAAGACTGCCAGGGGTTGCATAGTCTGGATGACTACAAAGCCAAGTGCTCTTA CATTAAATCAAATATCCCATGCGTCTCCCAAGGCTATATTGACTATCTTTACCTTTTCTATTGCAATCTTGGAAGATTTCCTCTTTTGGGCTATTGTCTT TCTTTTCTTTGGCTCTTGGTATTGTTTTATCTGTTGGGAAACACTGCTTCTGAATACTTTTGTTCTTCACTTGAAAAATTGTCTAAGCTGTTGAATTTGT CTCCTACAATTGCTGGGATTACCCTCCTTTCACTTGGCAATGGTGCCCCTGATGTTTTTGCCAGCCTAGTGTCTTTTATGGGTGACGGGACATCTAACGT TGGTTTTAATACAGTACTAGGTGGTGCTTCCTTTGTTTCTTGTGTTGTGGTTGGAATCATAAGCATTTTGGTGAAGCAAGAGGAATTTAGAGTCAACAGG TGTGCCTTTGTTAGGGATGTTTGCTTCTTCCTTTTAGTTCTTGCATCCTTAACTTTCATCCTGATTCATGGCAAGATCAATCTGTGGGGTGCAATGGGGT TTCTGTCGATGTATATTGTTTACTTCATGGTTGTTTACGTCCTGCAAGTCCATTGGAATGGTGGTGGAAATGAAAGCGAAAGGAACGCTAGTTCAAGTTA TGGCAGTGATTTGAATATACCAATTTTAAGCAGCATGGAAAAAGGGGAGCAAAATTATGTGAAGGGATGTGATATGGAGTGTGGTACTGAAGTAGAAATG AACAAATGTTGCTTTTGTGTACGATTATCAGCTCCTTGTCGTATACTCATCTGGATCCTTGAGATGCCTCTTTACTTACCTAGGAGATTGACAATTCCTG TTGTTTGTGAAAAGGGATGGTCCAAGCCAGCCACAGTTGCTTCAGTGACAATGGCACCAGTTCTCTTATCAGCTCTTTGGAATGCCCAGGGTGAGAGCGC CACCCTCAACACAAGCCTAATAGTATATGGAATTGGGTTGATGTTAGGAATGACATTTGGGGTTCTTGCATATGTAACAACTGAGAAGTCAAGTCCACCA CAGAAGTGCCTGCTTCCTTGGCTAGCAGGAGGATTCTTAATGAGTGTTACATGGAGTTATATAATAGCTCAGGAATTGGTGGGCTTGATAGTTTCACTCG GGTTTATATTTGGAATAAGTCCTTCTATACTAGGATTAACAGTTCTTTCCTGGGGAAACTCAATTGGTGATTTGATAACAAATTTGATATTGGCTATGAA TGGTGGCCCTGAAGGCGCACAAGTAGCTATATCAGGCTGTTATGCAGGTCCCATTTTCAACATCCTTTTCGGTCTCGGGTTGTCTCTGGTTGCCTCAGCC TGGTATGCTTACCCATCATCTGTTGTGATCCCAAAAGATCCCTACCTCTTGGAGACAATAGGCTTTCTGGTAGGTGGCCTGCTTTGGGCACTTGTTGTTT TACCAAGGAGAAATATGAAGCTTAACTGGGTTCTGGGAGGAGGGCTCTTGGCTATATACATGATGTCTGTGTCTTTGAGGCTAACTCAGGCACTTGGATC TTTCCATTTCCATGATACACATGCTTAG
AA sequence Show only first row Show all	>Potri.013G065900.3 pacid=42811602 polypeptide=Potri.013G065900.3.p locus=Potri.013G065900 ID=Potri.013G065900.3.v4.1 annot-version=v4.1 MVSISEHKKYVLFLNISFLLVACVFLIMQFSSAGFLVLGSSQSFKENDQQDCQGLHSLDDYKAKCSYIKSNIPCVSQGYIDYLYLFYCNLGRFPLLGYCL SFLWLLVLFYLLGNTASEYFCSSLEKLSKLLNLSPTIAGITLLSLGNGAPDVFASLVSFMGDGTSNVGFNTVLGGASFVSCVVVGIISILVKQEEFRVNR CAFVRDVCFFLLVLASLTFILIHGKINLWGAMGFLSMYIVYFMVVYVLQVHWNGGGNESERNASSSYGSDLNIPILSSMEKGEQNYVKGCDMECGTEVEM NKCCFCVRLSAPCRILIWILEMPLYLPRRLTIPVVCEKGWSKPATVASVTMAPVLLSALWNAQGESATLNTSLIVYGIGLMLGMTFGVLAYVTTEKSSPP QKCLLPWLAGGFLMSVTWSYIIAQELVGLIVSLGFIFGISPSILGLTVLSWGNSIGDLITNLILAMNGGPEGAQVAISGCYAGPIFNILFGLGLSLVASA WYAYPSSVVIPKDPYLLETIGFLVGGLLWALVVLPRRNMKLNWVLGGGLLAIYMMSVSLRLTQALGSFHFHDTHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17850			Sodium/calcium exchanger famil...		Potri.013G065900 [exp]	0	1
AT3G03341			unknown protein		Potri.017G128600 [exp]	1.00	0.8010
AT3G15180			ARM repeat superfamily protein...		Potri.001G396500 [exp]	2.44	0.7925
AT5G44440			FAD-binding Berberine family p...		Potri.011G162940 [exp]	9.94	0.7839
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	16.30	0.7481
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227500 [exp]	17.00	0.7399
AT5G44440			FAD-binding Berberine family p...		Potri.011G163232 [exp]	21.72	0.7611
AT4G00900		ATECA2, ECA2	ER-type Ca2+-ATPase 2, ARABIDO...		Potri.014G101900 [exp]	22.36	0.7816	Pt-ECA2.1
AT4G32140			EamA-like transporter family (...		Potri.006G266400 [exp]	33.76	0.7367
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.005G160300 [exp]	36.05	0.7785	PUP1.1
AT1G55340			Protein of unknown function (D...		Potri.006G233100 [exp]	36.74	0.7470

Compare expression of checked genes

Potri.013G065900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.