Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT2G24860 40 / 0.0002 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040400 [exp] 215 / 2e-72 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 41 / 6e-05 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G016400 [exp] 40 / 0.0002 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.006G266800 [exp] 39 / 0.0003 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001328 [exp] 168 / 8e-54 AT5G17840 143 / 3e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10013632 [exp] 130 / 3e-38 AT5G17840 111 / 9e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 40 / 0.0002 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 38 / 0.001 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G066000.1 pacid=42812678 polypeptide=Potri.013G066000.1.p locus=Potri.013G066000 ID=Potri.013G066000.1.v4.1 annot-version=v4.1 ATGGATTCTACCATTAGAATTGGTTCATCAATTGTTTTTCCCATTTCTTCTTCTTCACCAAAATTATCAAATCTACGGAGAAAAAATAAGATTGAATATG GGTCTCGATTCGGTGGGAATGGGTGCATCTCTGCAATCACTCATAATGGCTCTGTTTCTCCCTCTGCTGCTTCTCATGGGGAGTCAAGTTCAGTGGGAGA TGTGCATAGAAGAAGAAGCAGTCTTGAATCTACGTTTCGTTATGACAAGCCTATACCAGAGGAGAGAATTGAGGAGCCTGTTGGTATTTCATTGGCTGAA AAAGTAATTGGAGATAATCCTCGGTGCACTGATTGCCAAGCCAAAGGCGCGGTTCTTTGCACCACTTGTGCTGGTTCAGGCTTATATGTTGACTCTATAT TGGAAAGTCAGGGCATCATTGTCAAGGTCCGGTGCTTAGGTTGTGGTGGAACCGGAAACATCATGTGCTCAGAATGTGGTGGCCGAGGTCATGTTGGACT CAAGTAA
AA sequence Show only first row Show all	>Potri.013G066000.1 pacid=42812678 polypeptide=Potri.013G066000.1.p locus=Potri.013G066000 ID=Potri.013G066000.1.v4.1 annot-version=v4.1 MDSTIRIGSSIVFPISSSSPKLSNLRRKNKIEYGSRFGGNGCISAITHNGSVSPSAASHGESSSVGDVHRRRSSLESTFRYDKPIPEERIEEPVGISLAE KVIGDNPRCTDCQAKGAVLCTTCAGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHVGLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.013G066000 [exp]	0	1
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	1.41	0.7730
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	6.00	0.7426	Pt-RPT2.2
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.001G135800 [exp]	6.24	0.6662
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.009G118500 [exp]	10.00	0.7227
AT5G42960			unknown protein		Potri.014G181000 [exp]	10.39	0.7338
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.010G230500 [exp]	12.24	0.7084
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Potri.003G060600 [exp]	13.49	0.7042
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.004G232600 [exp]	15.16	0.6733	Pt-ATGSTZ2.1
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	16.24	0.6700
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.010G164500 [exp]	17.94	0.6479

Compare expression of checked genes

Potri.013G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.