Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03690 486 / 1e-172 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 452 / 2e-158 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 431 / 7e-151 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 430 / 2e-149 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 427 / 3e-148 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 424 / 8e-147 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 417 / 2e-144 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 410 / 7e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G37585 363 / 5e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 327 / 2e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145500 [exp] 449 / 1e-156 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.017G075600 [exp] 445 / 3e-155 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 431 / 7e-150 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.004G130300 [exp] 428 / 1e-148 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 426 / 7e-148 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 417 / 2e-144 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G003300 [exp] 409 / 3e-141 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 393 / 8e-135 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 341 / 4e-115 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020316 [exp] 544 / 0 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005676 [exp] 536 / 0 AT3G03690 454 / 3e-158 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 442 / 5e-154 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 441 / 1e-153 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 441 / 2e-153 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10019477 [exp] 422 / 1e-146 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10043324 [exp] 422 / 2e-146 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10031626 [exp] 419 / 8e-145 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 418 / 1e-144 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 414 / 5e-143 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.013G066200.1 pacid=42811670 polypeptide=Potri.013G066200.1.p locus=Potri.013G066200 ID=Potri.013G066200.1.v4.1 annot-version=v4.1 ATGGGCATCAAACTGTTCATGATCTCATTCATGGTAACCTCGATACTCTTCTCTCTACTATACATACCAACAAAACTAACCACACCCAATGCCAAATACA ACCCTGTGATCAACTTGAACATGTTGAAAGACCTCAAGCCATATCCAGTAACGTTCGCGTACTTGATATCAGCATCTAGAGGTGACGCGAAGAGGCTAAC GCGTGTGCTGAAGGCATTGTACCATCCAGGGAACTACTATCTGATTCATGTGGATGCTGATGCACCGGAAAAGGAGCATAGAGAAATAGCTGAATTTGTG TCTAGTGATCCAGTTTTTGGCCTGGTGGGAAATGTTTGGATTGTCGGTAAACCAAATCTGGTTACTTACAGAGGTCCTACTATGCTTGCTACTACACTCC ATGCAATGGCTATACTGCTGAGGACCTGCAAATGGGACTGGTTCATTAATCTCAGCGCCTCTGATTATCCCTTGGTCACCCAAGATGATCTGATCGATGC CTTCTCTACCTTACCAAGAAATCTCAACTTTATACAGCACAGCAGCCGCCTGGGATGGAAACTGAATAAGAGAGCCAAGCCAATCATGATAGACCCTGGT CTCTCCAGCCTGAACAAATCAGAGATCTGGTGGGTAAATAAACAAAGGAGTCTCCCAACTGCCTTCAAGCTCTATACAGGTTCTGCTTGGACCATACTGT CAAGATCTTTTGCTGAGTACAGCATTGTGGGCTGGGACAACTTGCCAAGGACTCTTCTTCTCTACTACACCAACTTTGTGTCCTCCCCTGAAGGCTACTT CCAAACTGTAATATGCAACTCTGAAGACTATAAAAACACCACAGTTAACCATGACCTTCATTACATTACTTGGGATACACCTCCTAAGCAGCACCCTCGG TCCCTAGGAGTTAAAGATTACAGAAGAATGATCTTGAGCAGCCGGCCATTTGCAAGAAAGTTCAAGAGAAATGATCCAGTTCTCGATAAGATTGATCGCG AGCTTCTTAAGAGATACAAGGGGCAGTTTGCTCACGGGGGCTGGTGTGCCAGGAGTGGCAAGAGGCATGGAACATGTTCAGGTTTGCAAAACGAGAATTA TGGTGTTTTGAGGCCTGGACCAGGATCAAGAAGGCTGCAAAATTTGCTGACCAAACTTCTTTCAGAAAAGAACTTCAAGCGGCAATGCAGATGA
AA sequence Show only first row Show all	>Potri.013G066200.1 pacid=42811670 polypeptide=Potri.013G066200.1.p locus=Potri.013G066200 ID=Potri.013G066200.1.v4.1 annot-version=v4.1 MGIKLFMISFMVTSILFSLLYIPTKLTTPNAKYNPVINLNMLKDLKPYPVTFAYLISASRGDAKRLTRVLKALYHPGNYYLIHVDADAPEKEHREIAEFV SSDPVFGLVGNVWIVGKPNLVTYRGPTMLATTLHAMAILLRTCKWDWFINLSASDYPLVTQDDLIDAFSTLPRNLNFIQHSSRLGWKLNKRAKPIMIDPG LSSLNKSEIWWVNKQRSLPTAFKLYTGSAWTILSRSFAEYSIVGWDNLPRTLLLYYTNFVSSPEGYFQTVICNSEDYKNTTVNHDLHYITWDTPPKQHPR SLGVKDYRRMILSSRPFARKFKRNDPVLDKIDRELLKRYKGQFAHGGWCARSGKRHGTCSGLQNENYGVLRPGPGSRRLQNLLTKLLSEKNFKRQCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	0	1
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.015G033600 [exp]	3.00	0.9122	MYB.38,MYB090
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	3.00	0.9237
AT2G40280			S-adenosyl-L-methionine-depend...		Potri.010G185000 [exp]	3.74	0.9231
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.005G145300 [exp]	4.89	0.8936
AT3G53010			Domain of unknown function (DU...		Potri.014G022600 [exp]	5.19	0.8701
AT5G56040			Leucine-rich receptor-like pro...		Potri.012G088100 [exp]	6.92	0.8863
AT3G60080			RING/U-box superfamily protein...		Potri.001G231000 [exp]	6.92	0.8987
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	7.21	0.8924
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	8.36	0.9020
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	8.77	0.8946

Compare expression of checked genes

Potri.013G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.