Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03680 1258 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 798 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 786 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 779 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G74720 779 / 0 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 758 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 756 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 746 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 732 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G17980 710 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066400 [exp] 1505 / 0 AT3G03680 1235 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 794 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 783 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 773 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 767 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 761 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 760 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G113800 [exp] 760 / 0 AT1G74720 1521 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G098700 [exp] 759 / 0 AT1G74720 1272 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016280 [exp] 794 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 788 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 763 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 759 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 756 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 744 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 738 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 707 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 703 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10010658 [exp] 697 / 0 AT5G17980 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.013G066500.3 pacid=42811147 polypeptide=Potri.013G066500.3.p locus=Potri.013G066500 ID=Potri.013G066500.3.v4.1 annot-version=v4.1 ATGGCAGAAACCTGTACAAGAAAACTGATAGTTGAGGTTTGCAATGCCAGAAACTTGATGCCAAAAGATGGCCAAGGAACAGCAAGTGCATTTGCTACTG TAGATTTTGATGGCCAAAGAAGGAGAACAAAGACCAAGCTCAGAGATCTGAATCCGGAGTGGGATGAGAAGCTTGAGTTTCTTGTCCACGATACTGACTC TATGGCTACTGAGACTTTAGAGATCAGTCTTTACAATGACAAGAAGACAGGTAAAAGAAGCACTTTTCTGGGCAAAGTAAGGATTGCTGGTAGTGCTTTC GTTAAATCTGGAGGAGAGACTCTTGTTTATTATCCGTTGGAGAAACGAAGCGTGTTTTCGCAGATTAAAGGAGAGCTGGGGCTGAAAGTCTATTACATCG ACGAAGATCCTCCGGCTCCACCAGCAGAGCAGAAACCTGAGGAGAAGGCACCAGAGACGGAAGAGAATAAGCCAGCAGAAGAGGCGAAACCTGAGGAAGA GAAAAAAGAAGAGGAGAAGAAAGAAGAGCCAAAGACGGAGTCCAATAAAGAGGCAAAAAAAGAAGAGGAGAAACCAAGTCCACCACCACAAGAGGAGAAT CCCAAAAAACCTGAGGAGGCAGCTCCTCCAGTTAAGGTGGAGAATCCGCCGTTGGCCGAGAGTGAAAAGAAGCCGTCGAAAGAAGAAAAGGAAAAGGCAG AGATTGTAAAAAGATCTGAGGTAACAATCAGTGATCTTGAACTCCGGTCTTTAGCCAGTGATCGAGGTCGAAGCGCTTATGATCTGGTGGATCGCATGCC ATTTCTCTATGTTCGAGTAGTGAAAGCCAAAACAGCAAACAATGAATCCAAAAGCCCAGTTTATGCCAAGCTCATGATTGGTACACACAGTATCAAAACC AAGAGCCAGAGTGACAAAGACTGGGATAAAGTCTTCGCTTTCGATAAAGAAGGATTGAATTCAACTTCTTTAGAAGTTTCAGTTTGGACAGAAGAGAAGA AAGAGAATGAAGAGGCAACACAAGAGTGTTCTCTGGGTACTGTATCTTTTGATTTGCAAGAGGTGCCCAAGAGAGTGCCCCCAGATAGTCCTTTGGCTCC ACAATGGTACGCTTTGGAATCGGAGAACTCTGCGGGAAATGAAGTCATGCTCGCCGTTTGGATTGGGACTCAGGCTGATGAGGCATTTCAAGAGGCTTGG CAATCGGATTCAGGTGGGTTATTACCGGAGACCAGAGCCAAGGTGTATCTGTCGCCAAAGCTTTGGTATTTGAGACTAACGGTTATCCAAACCCAAGATT TGCATTTAGGTTCAGCTAAGGCTCGAAACCCTGAACTTTATGTTAAAGCTCAACTTGGGGCCCAGCTTTTTAAAACAGGTAGGACTTCTGTTGGGTCAAC ATCTGCTAGCTCGGCTAATCCGACATGGAATGAGGATTTGGTTTTTGTGGCGGCTGAGCCGTTTGAGCCATTCTTGACTGTGACAGTGGAGGATGTTACT AATGGGCAGTCAGTGGGGCATGCTAAAATACACGTGGCAAGCATAGAAAGGAGGACAGATGATCGGACAGAGCTTAAATCAAGATGGTTTAATTTGGTAG GTGATGACACCAAACCCTACACGGGAAGGATACACGTCAGAGTGTGTTTAGAAGGTGGGTATCACGTTCTAGATGAGGCAGCTCACGTGACTAGTGATGT TCGAGCCGCAGCTAAACAGCTAGCCAAGGCTCCAATTGGGTTGCTTGAAGTTGGAATCCGAGGAGCCACAAATTTGCTTCCTGTGAAAACAAGGGATGGT ACTCGTGGGACCACGGATCCTTACGTGGTGGCTAAGTATGGGCCCAAGTGGGTCCGGACCCGTACGATCCTCGATCGATTTAATCCACGGTGGAACGAGC AATACACGTGGGATGTATATGATCCATGCACTGTGCTAACCATTGGTGTATTTGATAATGGAAGGTACAAGCATGATGAAGCTGCAGGAAAACAAGGCAA AGATGTTAGGGTTGGTAAAGTAAGGATCCGTTTATCAACTCTTGATACTAATCGGGTGTACTTGAATCAATATTCTCTTACAGTGTTACTTCCTAGTGGG GCCAAAAAAATGGGAGAGATCGAAATAGCGGTTAGATTTTCATGCTCATCATGGTTAAGTCTAATCCAAGCTTACACTTCACCAATGCTACCTAGAATGC ATTATGTGAAGCCTTTGGGTCCAGCCCAGCAAGACATTTTGCGACATACGGCAATGCGTTTGGTGACTGCTCGGCTAACCAGGTCCGAGCCACCATTGGG CCAGGAAGTAGTCCAGTTCATGTTGGATAGTGACACACACATGTGGAGCATGAGGAGGAGCAAGGCTAATTGGTTTAGGGTGGTGGGGTGTCTTACACAC GTCGCTACTTTGGCTCGTTGGATCGAAGGGATTCGCACCTGGGTACACCCACCCACTACTATTCTCATGCATGTACTGCTTGTAGCTGTTGTGTTATGTC CACATCTCGTGCTCCCCACCATATTCATGTATGCCTTTCTTATCTTAGTATTCAGATTTCGATACCGTCAAAGGGTCCCACTCAACATTGACTCCAGGCT CTCTTATGTGGACATGGTGGGACTTGATGAGCTTGATGAAGAGTTTGATGGATTCCCAAGCACACGATCACAGGATGTGGTTCGAATCCGATATGATAGA TTGCGAGCCCTAGCTGGTCGGGCCCAGACACTCTTAGGTGATTTTGCAGCCCACGGGGAGCGCTTAGAAGCTTTGTGGAATTGGAGGGATCCGAGAGCTA CTGGGATTTTTGTGGTGTTTTGCTTAGTTGCTTCATTGGTATTTTATGTGATTCCATTTAAGGTGTTTGTATTAGGGTTTGGGTTTTATTACCTCCGCCA CCCAAGGTTCCGTGACGACATGCCATCTGTCCCGGTTAGTTTTTTCAGGCGACTGCCGTCATTTTCGGACCAAATTCTTTAG
AA sequence Show only first row Show all	>Potri.013G066500.3 pacid=42811147 polypeptide=Potri.013G066500.3.p locus=Potri.013G066500 ID=Potri.013G066500.3.v4.1 annot-version=v4.1 MAETCTRKLIVEVCNARNLMPKDGQGTASAFATVDFDGQRRRTKTKLRDLNPEWDEKLEFLVHDTDSMATETLEISLYNDKKTGKRSTFLGKVRIAGSAF VKSGGETLVYYPLEKRSVFSQIKGELGLKVYYIDEDPPAPPAEQKPEEKAPETEENKPAEEAKPEEEKKEEEKKEEPKTESNKEAKKEEEKPSPPPQEEN PKKPEEAAPPVKVENPPLAESEKKPSKEEKEKAEIVKRSEVTISDLELRSLASDRGRSAYDLVDRMPFLYVRVVKAKTANNESKSPVYAKLMIGTHSIKT KSQSDKDWDKVFAFDKEGLNSTSLEVSVWTEEKKENEEATQECSLGTVSFDLQEVPKRVPPDSPLAPQWYALESENSAGNEVMLAVWIGTQADEAFQEAW QSDSGGLLPETRAKVYLSPKLWYLRLTVIQTQDLHLGSAKARNPELYVKAQLGAQLFKTGRTSVGSTSASSANPTWNEDLVFVAAEPFEPFLTVTVEDVT NGQSVGHAKIHVASIERRTDDRTELKSRWFNLVGDDTKPYTGRIHVRVCLEGGYHVLDEAAHVTSDVRAAAKQLAKAPIGLLEVGIRGATNLLPVKTRDG TRGTTDPYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKHDEAAGKQGKDVRVGKVRIRLSTLDTNRVYLNQYSLTVLLPSG AKKMGEIEIAVRFSCSSWLSLIQAYTSPMLPRMHYVKPLGPAQQDILRHTAMRLVTARLTRSEPPLGQEVVQFMLDSDTHMWSMRRSKANWFRVVGCLTH VATLARWIEGIRTWVHPPTTILMHVLLVAVVLCPHLVLPTIFMYAFLILVFRFRYRQRVPLNIDSRLSYVDMVGLDELDEEFDGFPSTRSQDVVRIRYDR LRALAGRAQTLLGDFAAHGERLEALWNWRDPRATGIFVVFCLVASLVFYVIPFKVFVLGFGFYYLRHPRFRDDMPSVPVSFFRRLPSFSDQIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066500 [exp]	0	1
AT3G62630			Protein of unknown function (D...		Potri.005G019600 [exp]	1.00	0.9288
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.016G126300 [exp]	2.00	0.8758	Pt-RHG1.4
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066400 [exp]	2.00	0.8949
AT4G19980			unknown protein		Potri.003G110200 [exp]	4.00	0.8538
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Potri.008G079400 [exp]	5.74	0.8780
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.001G278300 [exp]	6.48	0.8549
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	8.12	0.8470
AT1G07300			josephin protein-related (.1)		Potri.001G249500 [exp]	8.12	0.8695
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	8.36	0.8480
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.013G149000 [exp]	14.49	0.8362

Compare expression of checked genes

Potri.013G066500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.