Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) AT5G17820 344 / 3e-118 Peroxidase superfamily protein (.1) AT1G34510 333 / 5e-114 Peroxidase superfamily protein (.1) AT3G03670 323 / 7e-110 Peroxidase superfamily protein (.1) AT1G05260 267 / 8e-88 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G51890 267 / 1e-87 Peroxidase superfamily protein (.1) AT5G42180 265 / 5e-87 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G22410 261 / 2e-85 RHS18 root hair specific 18 (.1) AT4G11290 256 / 1e-83 Peroxidase superfamily protein (.1) AT5G14130 254 / 8e-83 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122351 [exp] 282 / 1e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 282 / 1e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 282 / 1e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 282 / 1e-93 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 281 / 4e-93 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 279 / 2e-92 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.007G122200 [exp] 278 / 8e-92 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 276 / 5e-91 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 273 / 3e-90 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005679 [exp] 399 / 1e-139 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10020312 [exp] 388 / 1e-128 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10013631 [exp] 364 / 9e-126 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 364 / 1e-125 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005681 [exp] 289 / 6e-96 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1) Lus10027405 [exp] 287 / 1e-95 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10031664 [exp] 285 / 1e-94 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10004859 [exp] 283 / 4e-94 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10043010 [exp] 279 / 4e-92 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10032511 [exp] 278 / 7e-92 AT5G22410 302 / 8e-102 root hair specific 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.013G066800.1 pacid=42811034 polypeptide=Potri.013G066800.1.p locus=Potri.013G066800 ID=Potri.013G066800.1.v4.1 annot-version=v4.1 ATGGGAATGAAATCTTCATTTCTGCTCATTCTCTTCATTGTTCCGGCTGTATTAGCCGATCTAAGAGTTGGGTTTTACAAACCAACATGCCCTGACGCAG AATCTATCATTTTTCAGGCAGTGCAAAAGCGGTTCAACACAGATAAATCCGTAACCGCAGCCTTGCTTCGCATGCATTTTCACGATTGCTTCGTTAGAGG ATGTGATGCATCTATTCTTATAGATTCAACCACTCAAAACCAAGCAGAGAAAGATGCAGGACCGAACCAGACTGTCCGTGAATACGAGCTTATTGATGAG ATCAAGAAAGCCTTAGAGGCTAAATGCCCTTCAAAAGTCTCATGTGCAGACATCATAACAGTTGCAACCAGAGATGCTGTAGTTCTTGCTGGAGGACCAA ACTACACTGTACCTACAGGAAGACGTGACGGGCTAGTCTCTAGAGCGGGTGATGTGAACTTGCCTGGACCACAAGTGGACGTGTCTCAAGCATTTCAAAT TTTCAGAGCAAAAGGTCTAACCCTTGAAGAAATGGTGATCCTGTTAGGAGCACATACTGTTGGTGTTGCACATTGTAGTTTCTTCAGTGAACGTCTTCAA AATGATCCATCAATGGATGCTAATTTAGCTGCCAACCTGAGTAATGTCTGTGCTAATCCAAATACTGATCCTACTGTATTGTTGGACCAAGGCACAGGTT TTGTGGTTGATAATGAGTTCTACAAACAGCTCCTTTTGAAGAGAGGAATAATGCATATTGACCAGGAACTTGCCATAGATAGCTCTACTTCTGGTTTCGT TTCACGTTTTGCGAGAGATGGGAATGGATTTAAGCAGAGCTTTGGAAAAGCAATGGTGAAGATGGGGAGCGTTGGGGTTCTTGTTGGAAATGGTGGAGAA GTGAGGAAAAATTGTAGAGTTTTCAATCCGAAAAACAAACCTACTGTCCCAAGTCCCCCAAAGAAAGACAAGGTTTCACCTCCCAGCAAAAAAGCCAATA ATAAAAAGCAAAAGAAACCTAAGGGTAACGGGAAGAAGAATAAGAACACAAGAGCACTGTAG
AA sequence Show only first row Show all	>Potri.013G066800.1 pacid=42811034 polypeptide=Potri.013G066800.1.p locus=Potri.013G066800 ID=Potri.013G066800.1.v4.1 annot-version=v4.1 MGMKSSFLLILFIVPAVLADLRVGFYKPTCPDAESIIFQAVQKRFNTDKSVTAALLRMHFHDCFVRGCDASILIDSTTQNQAEKDAGPNQTVREYELIDE IKKALEAKCPSKVSCADIITVATRDAVVLAGGPNYTVPTGRRDGLVSRAGDVNLPGPQVDVSQAFQIFRAKGLTLEEMVILLGAHTVGVAHCSFFSERLQ NDPSMDANLAANLSNVCANPNTDPTVLLDQGTGFVVDNEFYKQLLLKRGIMHIDQELAIDSSTSGFVSRFARDGNGFKQSFGKAMVKMGSVGVLVGNGGE VRKNCRVFNPKNKPTVPSPPKKDKVSPPSKKANNKKQKKPKGNGKKNKNTRAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26010			Peroxidase superfamily protein...		Potri.013G066800 [exp]	0	1
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	2.44	0.9828
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	4.00	0.9823
AT4G00910			Aluminium activated malate tra...		Potri.002G174600 [exp]	4.24	0.9727
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.013G004901 [exp]	5.65	0.9621
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Potri.015G081300 [exp]	5.91	0.9596	PtNrt2-6,Pt-NRT2.2
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	6.70	0.9786
AT5G15180			Peroxidase superfamily protein...		Potri.007G122250 [exp]	6.70	0.9819
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	6.92	0.9785
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	8.24	0.9805
AT2G23440			unknown protein		Potri.007G041500 [exp]	12.96	0.9634

Compare expression of checked genes

Potri.013G066800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.