Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03660 233 / 9e-77 HD WOX11 WUSCHEL related homeobox 11 (.1.2) AT5G17810 210 / 9e-68 HD WOX12 WUSCHEL related homeobox 12 (.1.2) AT2G33880 97 / 4e-23 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G45980 91 / 3e-21 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G01500 59 / 6e-10 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT3G18010 59 / 8e-10 HD WOX1 WUSCHEL related homeobox 1 (.1) AT5G59340 56 / 4e-09 HD WOX2 WUSCHEL related homeobox 2 (.1) AT2G17950 56 / 5e-09 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G28610 56 / 5e-09 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT4G35550 55 / 8e-09 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040800 [exp] 377 / 3e-133 AT3G03660 221 / 1e-71 WUSCHEL related homeobox 11 (.1.2) Potri.011G061400 [exp] 98 / 2e-23 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.004G051600 [exp] 96 / 1e-22 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.010G111400 [exp] 58 / 1e-09 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.015G039100 [exp] 57 / 2e-09 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 57 / 2e-09 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.001G237900 [exp] 56 / 3e-09 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1) Potri.005G252800 [exp] 56 / 4e-09 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.002G008800 [exp] 55 / 5e-09 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005282 [exp] 98 / 2e-23 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10013960 [exp] 70 / 2e-13 AT5G45980 179 / 6e-53 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10028271 [exp] 59 / 4e-10 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10040840 [exp] 59 / 6e-10 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10041909 [exp] 58 / 1e-09 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10028457 [exp] 57 / 2e-09 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10018011 [exp] 57 / 2e-09 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10038480 [exp] 56 / 2e-09 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10042007 [exp] 57 / 3e-09 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10040219 [exp] 56 / 3e-09 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.013G066900.1 pacid=42811716 polypeptide=Potri.013G066900.1.p locus=Potri.013G066900 ID=Potri.013G066900.1.v4.1 annot-version=v4.1 ATGGAAGATAATCAAGGCCAAGACCCTAATAGTCCAAGCAACCATGCCACCGAAAGAAGCGAACCGGTGAGGTCACGGTGGACTCCAAAGCCAGAGCAAA TATTGATACTTGAGTCCATCTTTAACAGTGGAATGGTAAACCCACCAAAGGATGAAACTGTGAGAATAAGGAAACTTCTAGAAAAATTTGGTTCTGTTGG TGATGCAAATGTCTTCTACTGGTTTCAAAACCGACGATCAAGATCTCGCCGCCGGCAACGCCAGATGCAGGCTAGTCTGGTTGCAGGAGAGCAAACAAAT AATCAACAGGCACAAGCTAGTGGTGGTGCAATTCAATATAAAGGTTGTAACACTTCTATTGGGTTTGCAAATTCTCCTTCTTTTGTTCAATCCCCGTCTT CTTATCTTGTTGGTTCCTCTTCTTCTTATGGAGTTGTTGATGAAGATCATGGTGGAGAGAGTCTGTATTCTTTCTCTAATCAAATGGCCTTTCAAGAAGT GGAGCAAACCTCTGGTGTAACTTCAATTTTATACCCATCGGAGACTTCTAATTTGCATTACCAAACTGCTGGATTCATCACAGTTTTCATCAACGGGATT CCCACAGAAGTTCCAAGGGGGCCACTTGACATAAAAGCAATGTTTGGTCAAGATGTAGTGTTGGTCCATTCTTCTGGAGTGCCAGTACCCACTAATGAAT TTGGGTTTCTAATGCAGAGCTTGCATCATGGTGAAAGCTATTTCCTGGTTTCAAGATCAACTTAA
AA sequence Show only first row Show all	>Potri.013G066900.1 pacid=42811716 polypeptide=Potri.013G066900.1.p locus=Potri.013G066900 ID=Potri.013G066900.1.v4.1 annot-version=v4.1 MEDNQGQDPNSPSNHATERSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQMQASLVAGEQTN NQQAQASGGAIQYKGCNTSIGFANSPSFVQSPSSYLVGSSSSYGVVDEDHGGESLYSFSNQMAFQEVEQTSGVTSILYPSETSNLHYQTAGFITVFINGI PTEVPRGPLDIKAMFGQDVVLVHSSGVPVPTNEFGFLMQSLHHGESYFLVSRST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03660	HD	WOX11	WUSCHEL related homeobox 11 (....		Potri.013G066900 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.003G182500 [exp]	35.63	0.8294
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.001G311700 [exp]	54.12	0.7333	MSJ1.1
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.009G062901 [exp]	86.61	0.7700
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.007G050300 [exp]	89.72	0.7824	GH3-1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061800 [exp]	94.24	0.7537
AT3G27150			Galactose oxidase/kelch repeat...		Potri.017G069500 [exp]	94.29	0.7978
AT5G53750			CBS domain-containing protein ...		Potri.011G122000 [exp]	97.10	0.7456
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.010G097700 [exp]	99.52	0.7976	PSKR.1
					Potri.004G122800 [exp]	116.61	0.7758
AT1G17860			Kunitz family trypsin and prot...		Potri.017G153400 [exp]	161.39	0.7788

Compare expression of checked genes

Potri.013G066900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.