Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17790 466 / 5e-152 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G55040 159 / 7e-40 zinc finger (Ran-binding) family protein (.1) AT1G70650 122 / 4e-29 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G48570 103 / 4e-23 zinc finger (Ran-binding) family protein (.1) AT2G26695 43 / 0.0001 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033000 [exp] 172 / 2e-44 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 165 / 1e-41 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 138 / 5e-34 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 133 / 5e-33 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 130 / 3e-31 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013630 [exp] 418 / 2e-131 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 374 / 1e-116 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10015180 [exp] 155 / 8e-39 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10009049 [exp] 140 / 3e-35 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 139 / 2e-34 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009681 [exp] 124 / 6e-30 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 126 / 8e-30 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10003580 [exp] 103 / 1e-23 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10043289 [exp] 51 / 7e-07 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10019433 [exp] 51 / 9e-07 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.013G067200.1 pacid=42811532 polypeptide=Potri.013G067200.1.p locus=Potri.013G067200 ID=Potri.013G067200.1.v4.1 annot-version=v4.1 ATGAGCAGCAACGCCACCAGGTTCCTCATGCTCCTCACCACCACAACCACCATTCCTTCCCCACTCCGTTACCCATCGATCCTCCGCCTCACCCGCCACC ACATTCCTTCATCTCTCTCCTCCCTTTCCCACCACCACCACAACCTCTTCACTCTCTCCCTTCCTCGCCCTTTAAAATCCAATTGCTCCCCTTCCCAGCA CCACCAACAACTCCATACCACTGCCCATTTCTCCGATTCCCCTTCCACCTCAACTTCCTTTCCTTCTACCTCCGGGTTCTCCGACCCCTGGCCAGAGTGG TCTAAATTTGTTAACAACCTCTCTGCGGCCGGTTATTTTAATATCAAGCATGGTTCTAATACTCCAAGTGATGATCTCACCTCAGTTGATGATTTATCAG AGGGGTTTTTGCGTTCTTGCACTGCTTCCTTAGCTTTCGCGCGTGATAAACCTCAGGCTTTAGGGATGCTTTCGAGAAGAGATATTGAGGTCGTGGTTCA AAGTGGGTTACCATTTTTGTTCAAGAATAGTGACGATTCAGTGAGGAGGATGAAGTTGTTTTTGCATGGAAGTGATAGTAATGTGCCAAATACTGATAAA GCACGGACAGTGGACCTGATGAAGTTTCTATTGAGTTATGCCAGCAGTTTTGTTTCTTCTGTGAAGACCAATCTTCATAATTTAGAACTTGTGGAGCCAT CTGTTCGAAGTCTCTTTAGTGAGTTGGCTCAGCTGGGCTACAATGCTGTGGAGGAAAACCTAAATGGTTCATTTGGAAATCAGTTCCCTGATAGATATGG ACAAACACCAAGGCCTCGTGGGCAAAATATTGAAATGAAAAGAGGTGACTGGATATGCCCAGGGTGTAGTTTCATGAACTTTGCAAGAAACATGAAATGC CTTGAATGTGATGAACAACGGCCCAAGAGACAACTTACTGGTGGAGAGTGGGAGTGTCCTCAATGTGATTTCTATAATTATGCAAGGAACATGGTATGCT TAAGGTGTGATTGCAAGCGACCAGGAGGTGTTTCACCCATTAGCACCAGCTCTGGATCAGACATAGGATATGGCAGTGGGAGCTATGTGAATAAAAGTGA TCTGGTTAGCAGGCTGGCTGCCAATGAAAAGATGGCACAGCAGAGGCATGGCAATGTTTCTCAGATGGACAGTTCTTTGGACAGGAATGGTGCCAAAGCA GATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGGGTGAACAGATTTGTTGTCAGCACAAGGAAGACTCCACTGGAAAGGAGGTTGGCAAATTCTC AATTCCAAGAAAACATGGGTACTGATGACACTCGGGAAAGGAATGATAATCAAAGCATAGGTACAACCAATCCCCTCAACCAAACTATCAATCGGAGCCC TGCTTCACCACTATTTAGTGCCCCTAGAGGAAGCAATTCCAATTATGTTCCGTTTGTGCCGTTACCTGCTGACATGTTTGCCAAGAAACCTGAGAACTCA AAGATGGAGGAGAGGGAGAAGTTGGAGACAGTCAACTATGAATCTCTTACTTCAAGCAACGGTGAGCAGAAAGGTGTTATTTCTGAGCGCAGTGAGCATG GTAAATCAAGAGATAGCTGCCAACCCTCTGAGATGTCCATGGACCAGAATCTGAGTGATGATAATGAGAAAGACGTAGCTGAAAAATCAGAGAGATGGTT TAAGAGGGTAGCAGAGTTGCATAATGTCACTGATCTGACCAGTGCAATTTCAGATGATGACTTCCCTGAGATCATGCCGTTGCGTAAAGGAGAGAATAAA TTTGTTGTTAGCAAGAAGAAAGATAGGTCTCTGACTTCTCCAATGTACAAGAGACATGCAGCCATGGAGCAAGCTAACACCACAAATTCCGTACCCTTTG TCCCCTTCCCACCCAACTACTTTGCTAAAAAGGATAATCAGCAACCAGATGAGACAGATTCCCATGATAAAGGTGTTAGCGAAACCTCAAGTTCTGCAAC TCTGGAGAAGCATCCACAGAAGTTGGATGATGCTAGACTTGGGGTTACCCATGCAGCTCAGGAGGACAGTACAGGGAGCTGGTCTGGGGAGAAGAAGAGT GATTTAAAGAAAGGTGCCACTTATGGGAAATCGGCAGGTGGAAATTTTACCCAAAATTTTATTGATCCCCTGCCAGCTGGCAGGGATAGTTGGAACACTG GAAATTCTAGGAGTGCGAATGCCACTGGGACATCAAATCAAATGGGGAACTCAATGCAAAACTTAAATAATTCCCCCGCAAATACCAATGACAGCGAGAG TAATGGATCTTCCTGGAAAGAGAATATCAGTGAGAAGAAGATTTTCACGGGAACTGCACCTCAATCATCTAAGAATCAGAGTGTTGGGGATAGCTGGACT GGAAAGAGCTTGGAAGGGTCGGCAGTGAAGGAACCAGATCCTTTGGACATGTCTGAAGAGGCCAAGTCAGAAAGGTGGTTCCGACGGGTTGCGCAGATCA AGGACATCTCAGAGCTCAGTCAGATCCCAGATGAGGATTTCCCATCAATAATGCCAATGCGGAAAGGGGTGAATAGATTTGTTGTGAGCAAACGAAAAAC ACCGTTAGAGAGAAGGTTGACATCTACTCAGTATAGAAAAAATCTTCCAATTGTCAGCTCTGATCCTGTGAAGGAAAATGACAGTAGCTGA
AA sequence Show only first row Show all	>Potri.013G067200.1 pacid=42811532 polypeptide=Potri.013G067200.1.p locus=Potri.013G067200 ID=Potri.013G067200.1.v4.1 annot-version=v4.1 MSSNATRFLMLLTTTTTIPSPLRYPSILRLTRHHIPSSLSSLSHHHHNLFTLSLPRPLKSNCSPSQHHQQLHTTAHFSDSPSTSTSFPSTSGFSDPWPEW SKFVNNLSAAGYFNIKHGSNTPSDDLTSVDDLSEGFLRSCTASLAFARDKPQALGMLSRRDIEVVVQSGLPFLFKNSDDSVRRMKLFLHGSDSNVPNTDK ARTVDLMKFLLSYASSFVSSVKTNLHNLELVEPSVRSLFSELAQLGYNAVEENLNGSFGNQFPDRYGQTPRPRGQNIEMKRGDWICPGCSFMNFARNMKC LECDEQRPKRQLTGGEWECPQCDFYNYARNMVCLRCDCKRPGGVSPISTSSGSDIGYGSGSYVNKSDLVSRLAANEKMAQQRHGNVSQMDSSLDRNGAKA DEDFPEIMPLRKGVNRFVVSTRKTPLERRLANSQFQENMGTDDTRERNDNQSIGTTNPLNQTINRSPASPLFSAPRGSNSNYVPFVPLPADMFAKKPENS KMEEREKLETVNYESLTSSNGEQKGVISERSEHGKSRDSCQPSEMSMDQNLSDDNEKDVAEKSERWFKRVAELHNVTDLTSAISDDDFPEIMPLRKGENK FVVSKKKDRSLTSPMYKRHAAMEQANTTNSVPFVPFPPNYFAKKDNQQPDETDSHDKGVSETSSSATLEKHPQKLDDARLGVTHAAQEDSTGSWSGEKKS DLKKGATYGKSAGGNFTQNFIDPLPAGRDSWNTGNSRSANATGTSNQMGNSMQNLNNSPANTNDSESNGSSWKENISEKKIFTGTAPQSSKNQSVGDSWT GKSLEGSAVKEPDPLDMSEEAKSERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSTQYRKNLPIVSSDPVKENDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	0	1
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	3.16	0.9756
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	3.16	0.9737
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G019000 [exp]	4.58	0.9731
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	7.00	0.9672
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	8.36	0.9704
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G031251 [exp]	9.00	0.9530
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.019G093400 [exp]	9.59	0.9558
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.009G013400 [exp]	10.19	0.9301
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	10.58	0.9663
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	10.77	0.9706

Compare expression of checked genes

Potri.013G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.