Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45400 587 / 0 exostosin family protein (.1) AT3G03650 550 / 0 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G74680 486 / 4e-169 Exostosin family protein (.1) AT1G67410 318 / 6e-104 Exostosin family protein (.1) AT2G35100 252 / 3e-78 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 241 / 4e-74 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G34270 209 / 1e-61 Exostosin family protein (.1) AT5G16890 201 / 3e-58 Exostosin family protein (.1) AT5G61840 90 / 3e-19 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 84 / 2e-17 ATGUT1, IRX10, GUT2 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G044600 [exp] 876 / 0 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 514 / 9e-180 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.008G034500 [exp] 309 / 2e-100 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.015G124800 [exp] 252 / 5e-78 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.012G124600 [exp] 250 / 3e-77 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 215 / 9e-64 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 208 / 3e-61 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 203 / 4e-59 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 165 / 2e-49 AT3G45400 145 / 5e-43 exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005684 [exp] 667 / 0 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10003870 [exp] 666 / 0 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 664 / 0 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10013627 [exp] 529 / 0 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10002060 [exp] 499 / 5e-174 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10024214 [exp] 433 / 1e-148 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10015791 [exp] 300 / 8e-97 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 299 / 3e-96 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 259 / 5e-81 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 259 / 1e-79 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.013G067400.1 pacid=42811428 polypeptide=Potri.013G067400.1.p locus=Potri.013G067400 ID=Potri.013G067400.1.v4.1 annot-version=v4.1 ATGGCTGAGAAGCACTCCTCATCATCCCTTGGGGTTGTTTCTAGGAAATCTATGTTTTGCTTGTTTTCTTTCGTGTCTGCCTTGTTTATACTGTCATGGT TTTTTATGTTGCGTTCCACGGTCAGTGCCGGATTTATTGACCTTAGTTTGTTACCTCATCCTAAACTTAATTCTGTGATTGATAATGGCAATTCTGCATC CTGGAATCGGAATGATGTTGAACCCTCGATTGGAAATCGAGCACGAGCAATTCCTGTAGACATTGAAGGAGATGGAGGAGAAGAAAAACCTCAAGAGAAA GATGATTTAGGAGATGTGAAATGTAACAGTTTTGATAATAATTGCAATCAAGTTCTTAAGGTTTTCATGTATGATTTGCCTTCTGAGTTTCATTTTGGAC TCTTGGATTGGAAACCTCAAGGGGGTAGTGTTTGGCCTGATCTTAGAGCTAAAGTGCCTGCATATCCTGGTGGGCTGAACTTGCAACATAGTATTGAATA TTGGCTTACAATGGATCTTCTTGCTTCAGAGATTCCTGGCATACCTAGAGCTGGTAGTGCAGTAAGAGTTCAAAATTCTAGTGAAGCTGATGTTATATTT GTGCCATTCTTTTCTTCTATAAGCTATAACCGATATTCCAAGGTGAATCCACACCAAAAGAAGAGCAAGAACAAATCATTGGAAGAAAAGTTGGTCAAGT TTGTGACTTCGCAAAAGGAATGGAAGAGGTCTGGGGGGCGAGACCATATCATTTTGGCTCACCATCCAAATAGCATGTTATATGCAAGGATGAAGCTATG GACGGCAATGTTCATACTTGCAGACTTTGGGAGGTATTCTCCAAATATAGCAAATGTTGGCAAAGATGTGATTGCACCATACAAACATGTAATTAAAAGC TATGCCAACGACTCCTCTAACTTTGACAGCCGCCCGACTTTGCTGTATTTTCAAGGAGCCATATACAGGAAAGATGGTGGCTTTGCTCGGCAAGAATTAT TTTATGCTCTAAAAGATGAAAAAGACGTGCATTTTCAGTTCGGTAGTGTACAAAAGGATGGAGTGAGCAAAGCTTCTCAAGGAATGCACTCCTCCAAATT CTGCCTTAACATAGCAGGTGACACGCCCTCATCAAACCGCCTCTTTGATGCCATTGCCAGCCACTGCGTTCCGGTCATCATCAGTGATGATATCGAGCTC CCTTATGAGGATGTCCTTGACTACTCTCAATTCTGCATTTTTGTCCGCACTTCAGATGCTGTCAGAGAAAAGTTCCTCATAAACCTTGTCAGGAGTATTA AGAAGGATGAATGGACTAGAATGTGGCAGAGGTTGAAAGAGGTAGAAAACTTCTTTGAGTTCCAATATCCATCAAAGGAAGGCGATGCAGTTCAAATGAT ATGGCAGGCTGTAGCAAGAAAAGTCCCTGCAATTAGGTTGAAGGTAAATAAGTTTAGGCGATTTTCTCGTTTTGGGACCCATGAAGATGGAGTGTTAAGA AAAATACCATCACCTAGTAATTTTTGGTGA
AA sequence Show only first row Show all	>Potri.013G067400.1 pacid=42811428 polypeptide=Potri.013G067400.1.p locus=Potri.013G067400 ID=Potri.013G067400.1.v4.1 annot-version=v4.1 MAEKHSSSSLGVVSRKSMFCLFSFVSALFILSWFFMLRSTVSAGFIDLSLLPHPKLNSVIDNGNSASWNRNDVEPSIGNRARAIPVDIEGDGGEEKPQEK DDLGDVKCNSFDNNCNQVLKVFMYDLPSEFHFGLLDWKPQGGSVWPDLRAKVPAYPGGLNLQHSIEYWLTMDLLASEIPGIPRAGSAVRVQNSSEADVIF VPFFSSISYNRYSKVNPHQKKSKNKSLEEKLVKFVTSQKEWKRSGGRDHIILAHHPNSMLYARMKLWTAMFILADFGRYSPNIANVGKDVIAPYKHVIKS YANDSSNFDSRPTLLYFQGAIYRKDGGFARQELFYALKDEKDVHFQFGSVQKDGVSKASQGMHSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDDIEL PYEDVLDYSQFCIFVRTSDAVREKFLINLVRSIKKDEWTRMWQRLKEVENFFEFQYPSKEGDAVQMIWQAVARKVPAIRLKVNKFRRFSRFGTHEDGVLR KIPSPSNFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45400			exostosin family protein (.1)		Potri.013G067400 [exp]	0	1
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	1.00	0.9609
AT4G21060			Galactosyltransferase family p...		Potri.006G011300 [exp]	3.60	0.8962
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	4.89	0.9358
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	4.89	0.9486
AT4G02830			unknown protein		Potri.005G208800 [exp]	5.00	0.9332
AT3G55060			unknown protein		Potri.008G047200 [exp]	6.24	0.9392
AT4G26288			unknown protein		Potri.009G120300 [exp]	7.48	0.9152
AT3G11320			Nucleotide-sugar transporter f...		Potri.001G247600 [exp]	8.77	0.9157
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	8.77	0.9070
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336766 [exp]	8.83	0.9253

Compare expression of checked genes

Potri.013G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.