Plant FIBer expression Database

Potri.013G067700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08700 494 / 1e-173 PS1 Presenilin-1 (.1)
AT2G29900 321 / 3e-106 PS2 Presenilin-2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G058301
[exp]
337 / 3e-112 AT2G29900 431 / 1e-149 Presenilin-2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020339
[exp]
516 / 0 AT1G08700 531 / 0.0 Presenilin-1 (.1)
Lus10009518
[exp]
513 / 0 AT1G08700 538 / 0.0 Presenilin-1 (.1)
Lus10031966
[exp]
332 / 9e-111 AT2G29900 471 / 3e-166 Presenilin-2 (.1)
Lus10035137
[exp]
278 / 1e-90 AT2G29900 410 / 1e-143 Presenilin-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0130 Peptidase_AD PF01080 Presenilin Presenilin
Representative CDS sequence
>Potri.013G067700.1 pacid=42810907 polypeptide=Potri.013G067700.1.p locus=Potri.013G067700 ID=Potri.013G067700.1.v4.1 annot-version=v4.1
ATGCAGTCGAGCATTTTAGATTCAATCGGTGTCGAAATTATTGGCGTCATGTCCCCAGTCTCAATCTGCATGCTCCTTGTTGTTCTCATCGTCTACTCTC
TCTCCTCTTCGAACCCTTTCTCTGCGGCCTCCGCTCCGCCGATCCGCACCGCTGCTAACCTCGTCTACCTCGAGAGCTCCTCCGACTCAACCTCCCAGAA
ATTCGAAGGCGCTCTTTTAAACGCGCTCGTGTTTGTTATTCTCATTGCCGTGGTTACTTTTTTTCTTGTTCTCTTGTATTATTACAATTGTACTGGATTC
TTGAAGAATTACATGCGGTTCTCGGCTTTTTTCGTGCTAGGTACAATGGGCGGCTCAATTTTTCTATCAATGATTCAGCATTTCTCAATTCCTGTTGATT
CAATTACCTGTTTTATTCTGTTGTTTAATTTTACAATTGTGGGCGTAATGTCATTGTTTTCAAGTGGGGTACCGATTTTTGTGAGGCAAGGATATATGGT
GGCATTGGGGATATTTGTGGCAGCTTGGTTTACTAAGTTACCAGAGTGGACTACGTGGGCTTTGCTGGTAGCTTTGGCACTATATGATTTGGTGGCAGTT
CTGGCACCTGGTGGGCCACTTAAGATGTTGGTGGAGTTGGCTCAGACTCGAGATGAGGAACTTCCAGCATTGGTTTACGAGGCTCGTCCAACAGTTTCAC
AAAATGGGATTGTGCAGGGTCGGAGTTTGGACCTTCTGGTTGGTGGTGTTTCGGACTCTCGGTCAGTGGAGATGCAAGCTATGTCAAGTAACAACGTGGA
TCAAAATGAGAATCAAAATCGTGCAAATTCTGGCTATACTGTTATTCAGGATACCAATTTTGGAAACATGGAAGGTGTACAAAGGAGAGATGAAGGGGGG
AGGTCCTTGTCAGTGGATATTTTGCATGAGAGGCACTCATCTAGCAGCAGCTCATCAGAGTATTCAACTGTGGTTGGAAATCGTGACTCTGAGATAGTTG
TCGATGAGGAAAGGTCTCCGCTTGTTGGTGCACCAGAAATGAGGAATGGGGGGGAACAGATGAGGGATGGCTTGGAGAATTCTGATGTTTCTAGTAGAGG
TATTAAACTTGGTCTTGGAGATTTTGTGTTTTACAGCGTCCTTGTGGGCAGGGCTGCAATGTATGATCTGATGACAGTATATGCATGTTACCTTGCAATT
ATTTCTGGACTTGGCTGTACCCTTATTTTGTTGTCAGTGTGGCGCCAGGCTCTGCCAGCTCTCCCTATTTCAATAGCTTTGGGTGTCATCTTTTACTTCT
TGACCCGGTTATTGATGGAACCTTATATTGTTGGGACAGCAACACAGCTGATGATGTTCTAA
AA sequence
>Potri.013G067700.1 pacid=42810907 polypeptide=Potri.013G067700.1.p locus=Potri.013G067700 ID=Potri.013G067700.1.v4.1 annot-version=v4.1
MQSSILDSIGVEIIGVMSPVSICMLLVVLIVYSLSSSNPFSAASAPPIRTAANLVYLESSSDSTSQKFEGALLNALVFVILIAVVTFFLVLLYYYNCTGF
LKNYMRFSAFFVLGTMGGSIFLSMIQHFSIPVDSITCFILLFNFTIVGVMSLFSSGVPIFVRQGYMVALGIFVAAWFTKLPEWTTWALLVALALYDLVAV
LAPGGPLKMLVELAQTRDEELPALVYEARPTVSQNGIVQGRSLDLLVGGVSDSRSVEMQAMSSNNVDQNENQNRANSGYTVIQDTNFGNMEGVQRRDEGG
RSLSVDILHERHSSSSSSSEYSTVVGNRDSEIVVDEERSPLVGAPEMRNGGEQMRDGLENSDVSSRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAI
ISGLGCTLILLSVWRQALPALPISIALGVIFYFLTRLLMEPYIVGTATQLMMF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08700 PS1 Presenilin-1 (.1) Potri.013G067700
[exp]
0 1
AT2G18840 Integral membrane Yip1 family ... Potri.018G093800
[exp]
4.69 0.8890
AT5G18520 Lung seven transmembrane recep... Potri.016G081300
[exp]
7.87 0.9103
AT3G57550 GK-2, AGK2 GUANYLATE KINAS 2, guanylate k... Potri.016G054200
[exp]
13.03 0.8587 Pt-AGK2.2
AT4G27780 ACBP2 acyl-CoA binding protein 2 (.1... Potri.012G017700
[exp]
13.60 0.8016
AT4G01400 unknown protein Potri.002G179600
[exp]
17.32 0.8717
AT3G08640 Protein of unknown function (D... Potri.016G140700
[exp]
24.37 0.8320
AT5G64970 Mitochondrial substrate carrie... Potri.007G093300
[exp]
31.49 0.8603
AT5G11640 Thioredoxin superfamily protei... Potri.006G237600
[exp]
33.76 0.8712
AT5G64090 unknown protein Potri.003G020500
[exp]
33.82 0.8343
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Potri.006G087500
[exp]
35.42 0.8689 LAC110c

Potri.013G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.