Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 131 / 3e-34 F-box family protein (.1) AT5G49610 64 / 3e-11 F-box family protein (.1) AT3G49450 64 / 5e-11 F-box and associated interaction domains-containing protein (.1) AT3G06240 63 / 1e-10 F-box family protein (.1) AT3G17530 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT2G27520 62 / 3e-10 F-box and associated interaction domains-containing protein (.1) AT1G47790 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT5G10340 57 / 7e-09 F-box family protein (.1) AT5G65850 57 / 9e-09 F-box and associated interaction domains-containing protein (.1) AT4G21240 57 / 1e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065500 [exp] 265 / 2e-85 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.005G043500 [exp] 253 / 6e-81 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.010G254000 [exp] 157 / 1e-43 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.003G215900 [exp] 137 / 2e-36 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.018G132800 [exp] 124 / 1e-31 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.006G071100 [exp] 105 / 5e-25 AT5G07610 52 / 4e-07 F-box family protein (.1) Potri.001G318400 [exp] 103 / 3e-24 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.004G232700 [exp] 88 / 3e-20 AT5G07610 117 / 3e-31 F-box family protein (.1) Potri.011G137200 [exp] 77 / 4e-15 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042989 [exp] 90 / 6e-21 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10015048 [exp] 81 / 2e-16 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 69 / 1e-12 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10041733 [exp] 66 / 3e-11 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 64 / 6e-11 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10006687 [exp] 63 / 6e-11 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10013872 [exp] 63 / 1e-10 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10026587 [exp] 59 / 4e-09 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10013873 [exp] 54 / 9e-08 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10010910 [exp] 54 / 1e-07 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G067800.2 pacid=42811671 polypeptide=Potri.013G067800.2.p locus=Potri.013G067800 ID=Potri.013G067800.2.v4.1 annot-version=v4.1 ATGAAGCGTGTTTCTTTATCTTCGGCGGAAATAATTGCCAGCAACCAAGACCTTCTGACCGAAATTCTCATCCGAATACCTGCAAAACCTCTCCTGAAAT TCAAGTCTGTATCAAAACAGTGGCTCTCTTTAATTTCTGACCCCAAATTCTGTATCTGGCATGCTTGCCACCAACGAGTCCTAAACCCCACACCCAATGC CCTCCTGCTCAACAACTTTTACTCCTCCACTCCGACTTTCCAGTTCATCCCTCTCATTGGTGATGATTCATCTTCTTATTCTCAAGCTGCAGTCTTTGAC TATTTGAATGTGTCTCCGAACTATCGGCTCAAGATAAAGAATTCTTGCAACGGATTGATCCTTTGTATGTCCATCTTCTATGGCTGTGGTTTTGATGATG CAGGTTCTGAACTCAAGGGTATTATTTGTAATCCCACTACCAAGCAATTTAAGACTCTTTCTTTTCCGGTTCCTAAATTCGGGAATTCTAAAACATATTC AAGTTTTTATGGTTTGGCCTTTGATCCCTTAAAATCACATCACTACAAGATCATTTGTCTTCATGTTGATTATCGAGTCTCTAAAAATCCCCAAATTTAT CTATATTCCTCACGTACCAACTCTTGGAGCTTCTTGCAAAACTCTCTGGAAGCACCAACTTTGTATGGTTTTGTGAATGGGGTTTTCTGCAATGATGCTA TTCATTGGTGCAGTTATGAACAAACCACATTGTATTTCGATGTAAATACTGAAAGTTTGAAGATAATGCCAATGCCTCCTATATTTTCGACTGTAAACAG ATTTCGGGAAATGATGTACTTTGGGGAATCAAGGGGCCGTTTGCACTTGGCAGGCATAGGACGCCGTTTCATCTCTCGATTTGATGTTTGGGAGATGGCT TCTGATTATTCTGGATGGTCTTTGCTGTACAATGTGAATCTTCATAGTATGAAAAGGGCATTTCCTGAACAAAAGTTTGATACATTTTCAATATTGAATG TTCTTCTGGCTGAAAAGGAAGAAGAATCGAAGGTTGTGATATCAGTTGACAGTATAGCCGTGTCCTTGAATGTTTACGATGGTACATGGAAGATGCTTAG TGTTTTAGAGCCAGGACTTGAATTTCCTGCTGAATTGGGTTATGAAGGGCATGATGCCTTTCAATACTTTCAGTCCCTTGTTTGTGTTTGA
AA sequence Show only first row Show all	>Potri.013G067800.2 pacid=42811671 polypeptide=Potri.013G067800.2.p locus=Potri.013G067800 ID=Potri.013G067800.2.v4.1 annot-version=v4.1 MKRVSLSSAEIIASNQDLLTEILIRIPAKPLLKFKSVSKQWLSLISDPKFCIWHACHQRVLNPTPNALLLNNFYSSTPTFQFIPLIGDDSSSYSQAAVFD YLNVSPNYRLKIKNSCNGLILCMSIFYGCGFDDAGSELKGIICNPTTKQFKTLSFPVPKFGNSKTYSSFYGLAFDPLKSHHYKIICLHVDYRVSKNPQIY LYSSRTNSWSFLQNSLEAPTLYGFVNGVFCNDAIHWCSYEQTTLYFDVNTESLKIMPMPPIFSTVNRFREMMYFGESRGRLHLAGIGRRFISRFDVWEMA SDYSGWSLLYNVNLHSMKRAFPEQKFDTFSILNVLLAEKEEESKVVISVDSIAVSLNVYDGTWKMLSVLEPGLEFPAELGYEGHDAFQYFQSLVCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07610			F-box family protein (.1)		Potri.013G067800 [exp]	0	1
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	1.00	0.8938
AT3G48880			RNI-like superfamily protein (...		Potri.015G139700 [exp]	4.89	0.8575
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	6.32	0.8546	Pt-MKP1.2
AT3G50910			unknown protein		Potri.007G022100 [exp]	6.48	0.8570
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	7.41	0.8473
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	8.48	0.8521
AT1G55000			peptidoglycan-binding LysM dom...		Potri.013G021600 [exp]	9.05	0.8652
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	10.58	0.8594	GTE910
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	10.72	0.8591
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	10.81	0.8342

Compare expression of checked genes

Potri.013G067800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.