Plant FIBer expression Database

Potri.013G068100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72550 930 / 0 tRNA synthetase beta subunit family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G070200
[exp]
1129 / 0 AT1G72550 939 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020531
[exp]
944 / 0 AT1G72550 878 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Lus10009382
[exp]
897 / 0 AT1G72550 832 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0383 PheT-TilS PF03483 B3_4 B3/4 domain
CL0123 HTH PF03484 B5 tRNA synthetase B5 domain
Representative CDS sequence
>Potri.013G068100.3 pacid=42812336 polypeptide=Potri.013G068100.3.p locus=Potri.013G068100 ID=Potri.013G068100.3.v4.1 annot-version=v4.1
ATGCCGACAGTTAGCGTGGGGAGAGATCGTTTGTTCTCAGCCCTAGGAAAATCTTACTCTCAAGAAGAGTTTGAGGATCTGTGCTTCAAGTTCGGCATCG
AGCTCGACGATGTGACAACTGAGAAAGCAATTATTAGAAAAGAGAGGCACTTGGATGAAGAAGATGGAGGAGTTGGTGATGACGATGGAGAAATCATCTA
CAAAATTGAAGTTCCTGCTAACAGATATGATTTGCTCTGCCTTGAGGGGATTGCCCAAGCCCTCCGCGTTTTTAACGAGGAGCAGCAGACACCAACATAT
ACACTTGCCAGCATTCCCAAGGACTCAATGCTTAAGATGCATGTCAAACCACAAACATCGTCGATTCGTCCCTTTGTTGTTTGTGCTGTTCTGAGAGATA
TTACATTTGATGAAGCTAGTTACAACAGTTTCATTGATCTTCAAGATAAGCTTCATCAAAACATTTGTAGGCGAAGAACCCTAGTTGCAATAGGGACTCA
TGACTTGGATACACTACAAGGCCCTTTCACTTATGAGGCTTTGCATCCCAAAAGCATTAATTTTGTGCCACTGAAACAGGAGAAAAGCTTCAGAGCTGAT
GAACTGATGGAGTTTTACAAGTCTGATATGAAGCTGAAGAAGTTCTTACAAATAATTGAGAATTCTCCAGTGTTTCCTGTCATACATGATTCTAAAAGAA
CTGTTTTATCTCTACCGCCAATTATTAATGGTGCGCATTCGGCTATCACTCTGAAGACTAAGAATGTTTTCATTGAATGCACAGCCACCGATCTGACAAA
GGCCAATATTGTATTGAACACGATGGTAACAATCTTTTCAGCATATTGTCAAAGAAAATTTGAGGTGGAGCCAGTTGAAGTGATATATTCTGATGGGAGG
TCATTCATTTACCCTGATTTATCTGTCTATAACATGGAAGTTCCTCTTTCATATATTACTGGCTCAATTGGAGTCTCTTTGGAGGCAGAAAAGGTTACTA
GTTTATTAAATCGGATGCAATTGCGTTCTGAGCATTCTGTACTTGATGACAACAAATGCAATATCAATGTATCGGTACCTCCAACAAGAAGTGACATTCT
TCACCCGTGTGATGTTATGGAGGACGTTGCAATTGCTTATGGGTACAATGACATTCCAAAGAGAAGGCTCCCATCAATGAAGCCACTGCCCTTGAATCAG
CTCGAGGATCTTATCAGAGCAGAGATTGCAATGAATGGGTTTACAGAGGTCTTAACATGGATTTTATGCTCTAATCGAGAGAATTTTGCCTTGTTAAATC
GAGAAGATGATCAATCAAGTGCAGTGATTATTGGAAATCCCCGTTCCTCAGATTTTGAGGCTGTCCGAACAAGCCTCATGCCTGGTGCTTTGAAAATTAT
TGGACATAACAAAGACCATCCTAAGCCAATCAAGATTTTTGAAGTGGGTGATGTAGCATTTTTGGATGAGAGTAAAGATGTTGGTGCAACTAACCGTCGC
CATCTTGCAGCTCTGTATTGTGGCACTAACTCAGGATTTGAGCTTATTCATTCCTTGTTGGACAGAATTATGGAAGTGCTGGGAACCCCTTTTGTGCCAA
TCGGTGACAATACGGGGTACTACATACAGCGGTCAGATGCACCTGAATTTCTTCCCGGTAGACAGGCTAGCATCATTTACAAAGGGAAGCATATTGGCGA
TTTTGGTATTGTGCACCCCCAGGTCTTGAACAACTTTGTCATTACGGATCCATGTTCCTTATTGGAAATTGATATTGAGCATTTTTTGTAA
AA sequence
>Potri.013G068100.3 pacid=42812336 polypeptide=Potri.013G068100.3.p locus=Potri.013G068100 ID=Potri.013G068100.3.v4.1 annot-version=v4.1
MPTVSVGRDRLFSALGKSYSQEEFEDLCFKFGIELDDVTTEKAIIRKERHLDEEDGGVGDDDGEIIYKIEVPANRYDLLCLEGIAQALRVFNEEQQTPTY
TLASIPKDSMLKMHVKPQTSSIRPFVVCAVLRDITFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALHPKSINFVPLKQEKSFRAD
ELMEFYKSDMKLKKFLQIIENSPVFPVIHDSKRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKANIVLNTMVTIFSAYCQRKFEVEPVEVIYSDGR
SFIYPDLSVYNMEVPLSYITGSIGVSLEAEKVTSLLNRMQLRSEHSVLDDNKCNINVSVPPTRSDILHPCDVMEDVAIAYGYNDIPKRRLPSMKPLPLNQ
LEDLIRAEIAMNGFTEVLTWILCSNRENFALLNREDDQSSAVIIGNPRSSDFEAVRTSLMPGALKIIGHNKDHPKPIKIFEVGDVAFLDESKDVGATNRR
HLAALYCGTNSGFELIHSLLDRIMEVLGTPFVPIGDNTGYYIQRSDAPEFLPGRQASIIYKGKHIGDFGIVHPQVLNNFVITDPCSLLEIDIEHFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72550 tRNA synthetase beta subunit f... Potri.013G068100
[exp]
0 1
AT3G55550 Concanavalin A-like lectin pro... Potri.016G101000
[exp]
2.82 0.7219 Pt-LECRK7.1
AT5G53480 ARM repeat superfamily protein... Potri.015G010400
[exp]
4.00 0.6750
AT5G04620 BIO4, ATBIOF biotin 4, biotin F (.1.2) Potri.001G126700
[exp]
9.16 0.7062
AT3G06720 IMPA1, IMPA-1, ... importin alpha isoform 1 (.1.2... Potri.013G010900
[exp]
13.85 0.5895 ALPHA.11
AT5G13500 unknown protein Potri.001G275600
[exp]
18.70 0.6349
AT5G06740 Concanavalin A-like lectin pro... Potri.001G455500
[exp]
28.84 0.6684
AT5G53480 ARM repeat superfamily protein... Potri.012G017500
[exp]
29.18 0.5727
AT4G05050 UBQ11 ubiquitin 11 (.1.2.3.4) Potri.016G088100
[exp]
30.00 0.6052 Pt-SUBI.1
AT4G34200 EDA9 embryo sac development arrest ... Potri.009G096600
[exp]
43.12 0.6042
AT5G49830 EXO84B exocyst complex component 84B ... Potri.010G249900
[exp]
46.98 0.6688

Potri.013G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.