Plant FIBer expression Database

Potri.013G068200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G56740 541 / 0 HAG02, HAC7, HAC07, HAG2 histone acetyltransferase of the GNAT family 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012916
[exp]
578 / 0 AT5G56740 537 / 0.0 histone acetyltransferase of the GNAT family 2 (.1)
Lus10032700
[exp]
355 / 4e-120 AT5G56740 332 / 2e-111 histone acetyltransferase of the GNAT family 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF10394 Hat1_N Histone acetyl transferase HAT1 N-terminus
Representative CDS sequence
>Potri.013G068200.1 pacid=42812252 polypeptide=Potri.013G068200.1.p locus=Potri.013G068200 ID=Potri.013G068200.1.v4.1 annot-version=v4.1
ATGGGGCAGAAACAACAACCCACCGCCGATCCAATCTCCGAGCCTAAGAAACGCCGTCGTGTTGGCTTCTCCAATATCGATGTTGGAATCGAGGCCAATC
AGTGCATCCTAATTTACCTGGTTTCTAGCAAGGAAGAAGTGGGTGCTTCACACAGTTTTCGTATTAGTCCAGTTGACTTGAATGGCTTTTTTGATGAGGA
TGGGAAAATCTACGGTTACAATGGGTTGAAGATAACCATCTGGGTTAGCAGCGTATCATTCCATGCATTTGCTGATATTAAGTTTCAGAGCACATCTGAT
GGGGGGAAAGGTATCACGGATCTCAAATCATCTCTTCAGAGAATTTTCGCCGATACTCTTGTTGACAACAAAGATGACTTCCTTCAGACATTTTCAACAG
AGAGTCATTTTGTTAGATCCATTATCTCAGATGGAGAGATATTGCAACACAAAACCTCCAATGGACATGTTGATTCTAATAGTCATTTAGGGACAGCTAC
TTCAGATGTCGAGGTTGTTCGCATGGTTATAGGAAATACAGCTGCTGGACACCTTTACAGTCGCCTGGTTCCTCTTGTTCTTCTTCTTATCGATGGTAGC
AATCCCATTGATGTTGATGATCCAGGATGGGAATTGTATGTCCTAATTCAGAAGAAAAGTGATGAACATGGGGATACTCAACATAAACTGTTGGGTTTTA
CTGCGGTGTATCGTTTTTATCATTACCCCGACAGCACACGTTTGCGGCTCAGTCAGATATTGGTGTTGCCTCCATACCAACACAAGGGTTATGGTGGTCA
CCTTGTTGAAGTACTCAGCAATGTTGCCATATTGGAAGATGTTTATGACTTGACAGTTGAAGAACCATTAGATTACTTCCAACACGTGCGCACCTCTATT
GACATAAAACGTCTCCTTCTCTTTGCCCCAATCCAAGATGCAGTTAATTCAACTGTTTCGTATCTAAAACAAGGAAAACTGTCAAAGAAAACCCATGTGC
CTTGTTTTAACCCACCTGTAAGTGCAGTTGAAGATGTTAGGAAAACCTTGAAAATCAACAGGAAACAGTTTCTTCAGTGTTGGGAAGTTCTAATTTATCT
AGGTCTTGATCCTGTTGACAAGTACATGGAGGATTTTGTGGCGATCATCTCAAGTCGTGTGAAGGCTGATGTCTTAGGGAAAGATTCTGGGAGCAGTGGG
AAACAAGTGGTTGAAGTTCCAAGTGATTATAATCCGGAGATGTCATTTGTAATGTTCAGGTCACAGGACAGTGAAGCTGCTCGTGTTTGGATGGATGAAA
ACCAGACAAATCAAGAAGAGCAACTCCAGCAATTGGTAGATGAAAGGGTCAAAGAGATAAAATTGATTGCGCAGAAGGTGCATCATGTCTAA
AA sequence
>Potri.013G068200.1 pacid=42812252 polypeptide=Potri.013G068200.1.p locus=Potri.013G068200 ID=Potri.013G068200.1.v4.1 annot-version=v4.1
MGQKQQPTADPISEPKKRRRVGFSNIDVGIEANQCILIYLVSSKEEVGASHSFRISPVDLNGFFDEDGKIYGYNGLKITIWVSSVSFHAFADIKFQSTSD
GGKGITDLKSSLQRIFADTLVDNKDDFLQTFSTESHFVRSIISDGEILQHKTSNGHVDSNSHLGTATSDVEVVRMVIGNTAAGHLYSRLVPLVLLLIDGS
NPIDVDDPGWELYVLIQKKSDEHGDTQHKLLGFTAVYRFYHYPDSTRLRLSQILVLPPYQHKGYGGHLVEVLSNVAILEDVYDLTVEEPLDYFQHVRTSI
DIKRLLLFAPIQDAVNSTVSYLKQGKLSKKTHVPCFNPPVSAVEDVRKTLKINRKQFLQCWEVLIYLGLDPVDKYMEDFVAIISSRVKADVLGKDSGSSG
KQVVEVPSDYNPEMSFVMFRSQDSEAARVWMDENQTNQEEQLQQLVDERVKEIKLIAQKVHHV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G56740 HAG02, HAC7, HA... histone acetyltransferase of t... Potri.013G068200
[exp]
0 1
AT4G23860 PHD finger protein-related (.1... Potri.003G140000
[exp]
1.00 0.8554
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.016G081700
[exp]
4.47 0.8140
AT1G09520 unknown protein Potri.010G002200
[exp]
7.07 0.8530
AT1G14900 HMGA high mobility group A (.1) Potri.012G048500
[exp]
9.16 0.8436
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Potri.002G044000
[exp]
12.04 0.8386
AT1G36280 L-Aspartase-like family protei... Potri.010G193400
[exp]
12.72 0.8444
AT5G02820 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTERO... Potri.006G132600
[exp]
14.42 0.8056 Pt-RHL2.1
AT4G30240 Syntaxin/t-SNARE family protei... Potri.015G078400
[exp]
14.83 0.7349
AT4G33400 Vacuolar import/degradation, V... Potri.014G029600
[exp]
15.29 0.8015
AT1G19980 cytomatrix protein-related (.1... Potri.002G022200
[exp]
16.27 0.7607

Potri.013G068200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.