Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ZIGA4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08680 499 / 2e-168 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT4G13350 216 / 3e-61 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT4G32630 179 / 9e-48 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT5G54310 76 / 3e-14 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 62 / 2e-10 AGD15 ARF-GAP domain 15 (.1) AT4G05330 59 / 3e-09 AGD13 ARF-GAP domain 13 (.1) AT3G07940 56 / 4e-08 Calcium-dependent ARF-type GTPase activating protein family (.1) AT3G53710 56 / 8e-08 AGD6 ARF-GAP domain 6 (.1.2) AT4G21160 55 / 8e-08 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT2G37550 54 / 2e-07 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076200 [exp] 241 / 3e-69 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.018G035000 [exp] 222 / 3e-62 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.006G246100 [exp] 216 / 4e-60 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.001G406300 [exp] 79 / 6e-15 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 77 / 2e-14 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 72 / 4e-13 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 69 / 1e-12 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 66 / 7e-11 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.003G198301 [exp] 57 / 4e-08 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005686 [exp] 552 / 0 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10020306 [exp] 427 / 1e-141 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10017729 [exp] 248 / 3e-72 AT4G13350 457 / 3e-153 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10022113 [exp] 179 / 5e-47 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10033090 [exp] 131 / 1e-31 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10038582 [exp] 84 / 1e-16 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 80 / 2e-15 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 79 / 3e-15 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 75 / 1e-14 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10016347 [exp] 54 / 4e-07 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.013G068300.4 pacid=42810963 polypeptide=Potri.013G068300.4.p locus=Potri.013G068300 ID=Potri.013G068300.4.v4.1 annot-version=v4.1 ATGGGGAGTAGAAAAGAAGAAGAGAGAAACGAGAAGATAATTAGAGGTCTCATGAAGCTTCCTCCCAACCGTCGCTGTATCAACTGCAATAGCTTGGGTC CACAGTATGTTTGTACTAATTTCTGGACTTTCATTTGTACTACTTGCAGTGGGATTCATCGAGAGTTTACTCATCGAGTGAAGTCAGTATCCATGTCGAA GTTCACATCCCAAGAAGTTGAAGCTCTTCAAAATGGTGGCAATCAGCGTGCAAGGGAAATATATTTGAAGGATTGGAACCAACAAAGGCAGAGATTGCCT GATAACAGTAAAGTGGATAAAGTGCGAGAATTTATAAAGGATGTGTATGTGGATAAAAAATATGCTGGAGGAAATACCTCTGATAAGCCTCCAAGAGATT TGCAGAGGATTAGAAGCCATGAAGATGAGACAAGACGTGCATGCTCTTATCATTCTTATTCTCAAAGTCCTCCTTATGACTTTCAATATGAAGATCGTCG TTATGGAAAGCAAACTAACACACTTACTCGCAAACCTGGTTCAGATCGAGGTCTTAATGTTGGAAAGATGGCTAGTTTTATTTGTAGTCCTACCCGCTTA AATGAAAGGGTGTTTGAAGACAGGTTTGCAAATGAGGGTTCTGTTTCTCGGGTTTCAGACTATTCTGTGTCTAGTGGTGGAGATCCAGTCAGATCTGGTG CTGAATCACCAAATTTTCAGAAGGATATTGCTTTTAGTCCACCTATTCAGCCTTCAAGGGATGGTTTAGGTGACGTAAAGCATCAAAAGGCAAATTCATT TTCAGAGGCAAGCTTTAAAAGAGATGCAGATGGGATTCCACATCCACAGAGAACTACATCATTAGGAAGCATGGGATCATTTGATAGCCTTTCTGTGTCC ATCAAGTCATACAATTCGGGAAGTTTGCTGGATATTGTCGCAGAAGCTGGGCAAGCTGCAGGAAATCCCCAGGAAAATATGCCTGCTTTTCCAGTGTCAT CCGTTTCTAGTCATGCTAGCTTGGACCTTTTCAAGGAACCAGTGGCTCCAGAACCAGCCTCTCCTATGGCTCCACCAATCGATTTGTTTCAGTTACCAGC AACGTCGCCAGCTCCATCTGTAGATTTGTTTCAAGTGCCCCCAGCTTCATCTATTAATTTATATCAGCCTTCCCAAACCTCTCTTCCTTCAACTCTAGGT AGCTATCAGCAGCAGTCAGTTACTTCCTTGGATGAAAAATCTCCACATTCCTCACTGCCTAAAAATGAAGGATGGGCAACTTTTGATGGTCCTCAGCCCA TAGCATCCACCCCGGGGCCTGAGAATCTTACATCTTCAGTAGGACCTTCCAATGCAGGTTCATCAAATTTTGACCAAGTTCCATCATTACATACAAGCAT GCAATGGCCACCTTTTCAAAACTCTGTTGATCATAGTTCATCATCAGTTCCTGATCCCTGGCTTGGTGATGTGCACAGTGTACAAGCCACTGGCAATACA AGTTCTCAGAATTGGAGTGCATTTGAGTTTGATGATTCAGTGGCAGGCATTCCCCTGGAGGGCATTAAGCAAAGTAGTGAACCACAAACATTATACAATC CTTCACCGACTGCTGATCAGTATTTTGGCTTTGGAGCTTCAGAGGTTGCTTCTACCTCACAATGCTTAAAGATATTATGGTTCTTCGAAGTTAGACTAAT AAACTGTGTTTTGCAGGACTTTAACAAAGATGGGATTCAAAGAACTGCCTATAATGGAGTACTTCCTGGTCCTAGTGAACCATCAGATATTGTTGCGGGG CCATCATATACTCCTTCAGGACATCCTTTGGTGGAAGAAACACAGTCTCATGCGGATCATAAATCAATTAACCCGTTTGATCTACCATACGAATCTGATT TGGAGCCGAGCAATATGTTCGTGGACATGAGCTCTTTGGAAGCTGCACTGCCCAACGCTAACTCACCATCCAGCTTCCTTGGTGGTGTGACTCAACCATG GTTTCCTCAAGATCTAGCGATGACATATATCCCTGCTGCACCACAAGGTGGATTAGCATATATGGCAGGACAAGCACCCAGCCCTCAATTAGGGAATGTT CAAACACAAGGGCCTGTTGCTTCTGTTGGAGGGAATCCATTTGCATAG
AA sequence Show only first row Show all	>Potri.013G068300.4 pacid=42810963 polypeptide=Potri.013G068300.4.p locus=Potri.013G068300 ID=Potri.013G068300.4.v4.1 annot-version=v4.1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICTTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWNQQRQRLP DNSKVDKVREFIKDVYVDKKYAGGNTSDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYDFQYEDRRYGKQTNTLTRKPGSDRGLNVGKMASFICSPTRL NERVFEDRFANEGSVSRVSDYSVSSGGDPVRSGAESPNFQKDIAFSPPIQPSRDGLGDVKHQKANSFSEASFKRDADGIPHPQRTTSLGSMGSFDSLSVS IKSYNSGSLLDIVAEAGQAAGNPQENMPAFPVSSVSSHASLDLFKEPVAPEPASPMAPPIDLFQLPATSPAPSVDLFQVPPASSINLYQPSQTSLPSTLG SYQQQSVTSLDEKSPHSSLPKNEGWATFDGPQPIASTPGPENLTSSVGPSNAGSSNFDQVPSLHTSMQWPPFQNSVDHSSSSVPDPWLGDVHSVQATGNT SSQNWSAFEFDDSVAGIPLEGIKQSSEPQTLYNPSPTADQYFGFGASEVASTSQCLKILWFFEVRLINCVLQDFNKDGIQRTAYNGVLPGPSEPSDIVAG PSYTPSGHPLVEETQSHADHKSINPFDLPYESDLEPSNMFVDMSSLEAALPNANSPSSFLGGVTQPWFPQDLAMTYIPAAPQGGLAYMAGQAPSPQLGNV QTQGPVASVGGNPFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Potri.013G068300 [exp]	0	1	ZIGA4.1
AT5G04590		SIR	sulfite reductase (.1)		Potri.001G257000 [exp]	1.41	0.8327	Pt-SIR.2
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.019G018500 [exp]	7.93	0.7636
AT1G74840	MYB		Homeodomain-like superfamily p...		Potri.012G073900 [exp]	11.22	0.8080
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Potri.014G090500 [exp]	12.36	0.7761
AT1G50660			unknown protein		Potri.011G090100 [exp]	12.48	0.7823
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.002G129166 [exp]	17.43	0.7661
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.012G083800 [exp]	20.92	0.7882	Pt-HDA6.2,HDA909
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.016G050500 [exp]	22.20	0.7558
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	22.58	0.7808
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	25.74	0.7441

Compare expression of checked genes

Potri.013G068300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.