Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20060 393 / 3e-121 ATP binding microtubule motor family protein (.1) AT1G59540 108 / 5e-24 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G36200 101 / 1e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22610 99 / 6e-21 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G28620 98 / 1e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G21380 97 / 4e-20 Kinesin motor family protein (.1) AT3G45850 96 / 6e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G63640 96 / 6e-20 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT2G37420 96 / 6e-20 ATP binding microtubule motor family protein (.1) AT5G41310 96 / 6e-20 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013300 [exp] 105 / 6e-23 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G085300 [exp] 103 / 2e-22 AT5G02370 660 / 0.0 ATP binding microtubule motor family protein (.1) Potri.006G210700 [exp] 101 / 1e-21 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 100 / 2e-21 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.016G077800 [exp] 100 / 5e-21 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 100 / 5e-21 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 98 / 2e-20 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G161100 [exp] 97 / 2e-20 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 97 / 3e-20 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033133 [exp] 530 / 3e-173 AT1G20060 380 / 5e-116 ATP binding microtubule motor family protein (.1) Lus10034537 [exp] 216 / 6e-60 AT1G20060 194 / 2e-52 ATP binding microtubule motor family protein (.1) Lus10017016 [exp] 104 / 1e-22 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 103 / 5e-22 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025688 [exp] 102 / 8e-22 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018145 [exp] 101 / 1e-21 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024429 [exp] 101 / 2e-21 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10014216 [exp] 99 / 8e-21 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018661 [exp] 98 / 2e-20 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 98 / 2e-20 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.013G068501.1 pacid=42812036 polypeptide=Potri.013G068501.1.p locus=Potri.013G068501 ID=Potri.013G068501.1.v4.1 annot-version=v4.1 ATGGAGGCGAAAAGTCCATCTGAATGTCCAAACACAGTCACCGTCCGGCGAAACCCTCACAGAAGAGCGAGGCCTACACCTTCTGCTTCCATAAACCCTA ATCCCAATGCTCAAAATCCAAATATGAAAAGAGAAATCTCTTCATTCCCAATTCAAGACATTCTTGCAATGGAAATCCCTCAAAAGAACCCACCAGAACC ACCAGCACCTGCTACCTCAGAAGACCTTAAAGTTTATCTTAGAATTCGACCCATTGTTACGCTTAAGCCAAACACCAAAGATCAAAAAATTTTTAGGCAA AGACAGAAAAACGCTTGGCCTCAAAACCCTTCATCCAAAAACAATAGTGCGAACGTAAAGAAAAACAACACCACCACCACCACTAGTAGTAGTAATGAGG TTTGTATAGATGTCAATGATTCTCATTCGGTTACTCTATCACCACCTGCATCCTTACAAGACTCTAAAAGAATTAAATCCGAGGTTTATGAAGGATTTTC TCATGTTTTTGCCTCCGATTCCACTCAGAATGAGGTGTTTGAGAAGATGGTGAAGCCATTAGTGGATGATTTTCTTAATGGAAAAAGTGGACTGTTAGCT GCATTAGGTCCAAGTGGTTCAGGGAAGACTCATACAGTTTTTGGGACTCCTAGGGAGCCTGGGATGGTTCATCTAGCACTAAAACAGATTTTTAAGGAGG CTCAGCAATGTGGTTCTAAGTTGACAAGGGAATTCAAAGTATCTGTTTTTGAAATATATTCAGATCGAGGTAAGGGAGAGAAAATCTCTGACTTATCCCC AGATGGAGGTGATTTGTCTATGCAGCAGGCTACCATTAAAGGTCTCCAAGAGGTTGCCATTTCTAGTGCTGCACAGGCAGAATCCTTGATAGCTTGTGCA ATGTTGAAACGCACAACAGCCATGACCAATACGAATAGCCAATCAAGCCGGTCACAGTGTATCATTAACATCCACAGTTTTGTCAGAGATCCAGATGTTG AACCAAACAATGCTGTCCTTACCATTGTTGATCTCGCTGGAGCAGAGCGCGAAAAGAGAACTGGCAATCAGGGGTCAAGATTGATCGAAAGTAATTTCAT CAATAATACATCAATGGTTTTTGGCCTATGTCTTAGATCACTATTGGAGCACCAGAGTAATCCCAAGAAACCATTAAAGATGCACTTCAAGAACTCCATG TTGACTCGGTATCTACGAGATTATCTAGAAGGAAAAAGAAGAATGACTTTGATATTAACAGTAAAACCAGGAGAACATGACTATTCCGATACATCCTACT TATTAAGACAAGCTTCTCCTTTTATGAAAATCAAGTTCACTAATGTTGAGGAACCATCTATGTTTCTTAACAAGAGGAACATTGAAATGTTGCCTAGAGT TGAACAGGCAAAAAAAATGAAATGCAGTGGACGGTATGCAAAGACCGAGGAAGGAAAAAGTGTTAGAGACGAACACCCACTCTTGCCAAAAGTTACCAAA AGAATCTACACATCGGACTCTGTTTGTGCTGCTCTAGTCAAGCCTGACTCTATTGATTTGCCAAGGGAGAGAAACCATCAAGTCATGCAAAATTTTGCGA AAGCTTTATGGAATGTCTTGAAGCAATATAAAGAAAAACTCATGGTGGCAGAAAGGGAAATCCAAGGTCTCAATGAGATTATTGGAAATGAAAAGACAAG ATATTTTAAGCTAGAAAAGGAGCTCAAGGATTTTAAATCATACTGTTCTTGCTCCATGGAAAACTCAACGGTGTCCACCTTGGTTAACATAGATACCAAG AGCAAAGCCCTTGACCCCAGGTGTCACAATGACTTTGAACCTGGAAATGATCAAGATGTATTTGCTGAGGCACCTGAATGCAATACAACTCAAAAATTTG ATGGTACCCCTGGGCATGATCAAAATATAATTTTTGAGATAGAGGAGAGTGCTCATTTTCTGAACCTTAAGGCATCTGAATGCGATGGTTCTCCAAGAAA AGATCGAGAGGCAACTCCTAAAAAATGTGACTCCACCCCAATACAGGATCAAAATGTAATTTATGAGATAAAGGAGAAAGATCATTTTCTAAACCTCAAG GCATTTGAATGTGATGGTTCTCCAAGAAAGGATCAGGGTGCAACTAAAAAATACGATTACACCCTAGGACATGATCAACATGTATTTTCTCAGATAAAGG AGAAAGATCATTTTCTAAACCTCAAGGCATCTGAATGCAATGGTTCTCCAAGAAAGGATCAATGTGCAACTAAAAAATGCGATTACACCTTAGGACATGA TCAAAATGTATTTTTTCAGATAGAGGAGAAAGATCATTTTCTAAATCTCAAGGCACCTGAATGCAATGGTTCTCCAAAAAAGGATCGAGGTGCAACTAAA AATTGCGATTACACCACAGGAAATGATCAATATGTATTTTCTCAGACGGAGGAGCATGTTCATTCTCTAAATCGTAGGGCATCTGAATGCGATGGTTCTC CGAAAAAGTATCAGGATGTTGTTACTAAGAAATCTTTGGATCCATCTGTATCACCCAAAGATGTCGCATCCATTCAAAAGTGCAACCTTGATGTGCCAGA AAGTGAATTACTGTCAGATAGTTCTTGCAAACCATTGAATGTTTTGAAACCAAAAAGGAGACTGTTGCCTGCCTCTTCTACATTACTGAGGGATATCCCT TTGGGCATTGAGGATGAATCTGAGAAGCCAAAAATTCCATATCTGTTTGCTATGCAGGGAAATAGAGGTGCGAAGAAATCGGCAGCAGATGAAACAAAAA GAACTCAGGGCAGCATCTCTCTCTTGCGTTTGCTTCAAAGCAATCTTCATGTCTAG
AA sequence Show only first row Show all	>Potri.013G068501.1 pacid=42812036 polypeptide=Potri.013G068501.1.p locus=Potri.013G068501 ID=Potri.013G068501.1.v4.1 annot-version=v4.1 MEAKSPSECPNTVTVRRNPHRRARPTPSASINPNPNAQNPNMKREISSFPIQDILAMEIPQKNPPEPPAPATSEDLKVYLRIRPIVTLKPNTKDQKIFRQ RQKNAWPQNPSSKNNSANVKKNNTTTTTSSSNEVCIDVNDSHSVTLSPPASLQDSKRIKSEVYEGFSHVFASDSTQNEVFEKMVKPLVDDFLNGKSGLLA ALGPSGSGKTHTVFGTPREPGMVHLALKQIFKEAQQCGSKLTREFKVSVFEIYSDRGKGEKISDLSPDGGDLSMQQATIKGLQEVAISSAAQAESLIACA MLKRTTAMTNTNSQSSRSQCIINIHSFVRDPDVEPNNAVLTIVDLAGAEREKRTGNQGSRLIESNFINNTSMVFGLCLRSLLEHQSNPKKPLKMHFKNSM LTRYLRDYLEGKRRMTLILTVKPGEHDYSDTSYLLRQASPFMKIKFTNVEEPSMFLNKRNIEMLPRVEQAKKMKCSGRYAKTEEGKSVRDEHPLLPKVTK RIYTSDSVCAALVKPDSIDLPRERNHQVMQNFAKALWNVLKQYKEKLMVAEREIQGLNEIIGNEKTRYFKLEKELKDFKSYCSCSMENSTVSTLVNIDTK SKALDPRCHNDFEPGNDQDVFAEAPECNTTQKFDGTPGHDQNIIFEIEESAHFLNLKASECDGSPRKDREATPKKCDSTPIQDQNVIYEIKEKDHFLNLK AFECDGSPRKDQGATKKYDYTLGHDQHVFSQIKEKDHFLNLKASECNGSPRKDQCATKKCDYTLGHDQNVFFQIEEKDHFLNLKAPECNGSPKKDRGATK NCDYTTGNDQYVFSQTEEHVHSLNRRASECDGSPKKYQDVVTKKSLDPSVSPKDVASIQKCNLDVPESELLSDSSCKPLNVLKPKRRLLPASSTLLRDIP LGIEDESEKPKIPYLFAMQGNRGAKKSAADETKRTQGSISLLRLLQSNLHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	0	1
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	1.00	0.9568
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	2.44	0.9352
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	3.46	0.9416
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.006G056400 [exp]	5.29	0.9127	Pt-ATJ6.1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	6.32	0.9286
AT3G06840			unknown protein		Potri.003G073200 [exp]	7.07	0.8914
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.005G173300 [exp]	7.21	0.8784
AT4G37110			Zinc-finger domain of monoamin...		Potri.012G044400 [exp]	7.21	0.9292
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	10.34	0.8584
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	10.95	0.9051

Compare expression of checked genes

Potri.013G068501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.