Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22180 350 / 1e-120 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 329 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75170 286 / 1e-95 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 251 / 3e-82 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 92 / 2e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 86 / 3e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 84 / 8e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 79 / 1e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 72 / 1e-13 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 70 / 5e-13 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093400 [exp] 346 / 4e-118 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G025800 [exp] 277 / 3e-92 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 274 / 5e-91 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 264 / 3e-87 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 263 / 7e-87 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 128 / 4e-35 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.017G063966 [exp] 106 / 1e-26 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 92 / 2e-21 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G088300 [exp] 92 / 3e-20 AT1G05370 520 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033464 [exp] 337 / 4e-115 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10020911 [exp] 337 / 1e-114 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10014312 [exp] 278 / 1e-92 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 276 / 9e-91 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 267 / 2e-88 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 262 / 1e-86 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 261 / 4e-86 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10023956 [exp] 129 / 1e-35 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10004684 [exp] 109 / 1e-27 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 103 / 9e-26 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G068700.5 pacid=42811600 polypeptide=Potri.013G068700.5.p locus=Potri.013G068700 ID=Potri.013G068700.5.v4.1 annot-version=v4.1 ATGTCTATCAGAAAGTTGCAAGGAAGCAGTACAGAAAAATCTTTGTCGGAGCAAGAGCAGCTGGCTAAGATCAATGATGTTAGGAAGATTCTAGGTCCTG TAGCTGATAAGCTTCCAGTGCTTTGTTCTGATGCATCAATATCAAGGTATCTCAGAGCAAGGAACTGGAATACAAAGAAGGCAGCCAAGATGTTGAAAAA CACATTGAAATGGAGGTTGGAATTCAAGCCTGAGAAGATCCGATGGGAAGATATTGCTAATGAAGCTGAGACTGGAAAAGTCTATAGAGCTAATTATCTT GACAAGAAGGGACGGACTGTTCTTATCTTTAGACCTGGTTTCCAGAATACAAGCGGCATAAGAGGACAGATCAGACACCTTGTTTACTGTATGGAGAATG CTATAACAACTTTAAATCCAGATCAGGATCAGATGGTATGGCTAATTGATTTCCAAGGGTGGACAATGTCCTGCATATCAGTGAAGGCTGCTCGGGAAAC AGCTCACATCCTGCAAAATCATTACCCTGAGAGACTAGGTGTTGGAATCCTCTACAACCCCCCCAAAGTATTTGAATCCTTTTGGACGCTGGTGAAACCA TTTATTGAACCCAAAACATACAAGAAAGTGAGTTTTGTCTATTCCAATGGACCACAGAGCCAAAAGCTGATGGAAGAACTCTTTGATATGGATAAGCTGG ATTGTGCATTTGGTGGCAGAAACTCAGCTGGGTTTAACTATGAAGCTTATGCCCAATGGATGAGGGAGGATGACAAGAAAAAGTTTGATATGATGAACTG TGGCTCGTCATCACCGCTACCATCCATCATGTCTGAATCACAGAGCTCAGAGACATTGACTCCAAGTGGTATCTCCATGGCTTCTGACGAAGATGACAGT TCATCTGGCGATGAAAAAACCTTAAACTTGGAGAATATTGATGAGAAAACACAAGGTTTGCCACTTAGTGGCGAAGATGTTGCAGTTAGTGAAGCAGTTG ACATAGTAAAAGAACTAAAGAAAGGAGAGCTGGCATGA
AA sequence Show only first row Show all	>Potri.013G068700.5 pacid=42811600 polypeptide=Potri.013G068700.5.p locus=Potri.013G068700 ID=Potri.013G068700.5.v4.1 annot-version=v4.1 MSIRKLQGSSTEKSLSEQEQLAKINDVRKILGPVADKLPVLCSDASISRYLRARNWNTKKAAKMLKNTLKWRLEFKPEKIRWEDIANEAETGKVYRANYL DKKGRTVLIFRPGFQNTSGIRGQIRHLVYCMENAITTLNPDQDQMVWLIDFQGWTMSCISVKAARETAHILQNHYPERLGVGILYNPPKVFESFWTLVKP FIEPKTYKKVSFVYSNGPQSQKLMEELFDMDKLDCAFGGRNSAGFNYEAYAQWMREDDKKKFDMMNCGSSSPLPSIMSESQSSETLTPSGISMASDEDDS SSGDEKTLNLENIDEKTQGLPLSGEDVAVSEAVDIVKELKKGELA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22180			Sec14p-like phosphatidylinosit...		Potri.013G068700 [exp]	0	1
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.014G159300 [exp]	1.00	0.8811	COP1.1
AT1G66330			senescence-associated family p...		Potri.017G129100 [exp]	6.00	0.7917
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	6.78	0.8628	GCN2.2
AT1G51340			MATE efflux family protein (.1...		Potri.009G053700 [exp]	7.48	0.7987
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	7.74	0.7926
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G368000 [exp]	8.83	0.7891
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	9.48	0.8230
AT5G59400			unknown protein		Potri.009G032300 [exp]	20.19	0.7701
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	24.08	0.8098
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	26.58	0.8002

Compare expression of checked genes

Potri.013G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.