Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 437 / 3e-129 unknown protein AT2G29620 137 / 1e-32 unknown protein AT1G07330 129 / 5e-30 unknown protein AT5G58880 82 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G044500 [exp] 1407 / 0 AT5G17910 296 / 1e-82 unknown protein Potri.009G043000 [exp] 128 / 2e-29 AT2G29620 169 / 6e-43 unknown protein Potri.001G249000 [exp] 123 / 1e-27 AT5G17910 134 / 2e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020367 [exp] 256 / 1e-74 AT5G17910 250 / 2e-73 unknown protein Lus10009543 [exp] 258 / 4e-74 AT2G29620 249 / 1e-71 unknown protein Lus10020368 [exp] 180 / 8e-46 ND 43 / 0.001 Lus10009544 [exp] 179 / 3e-45 AT5G17910 43 / 0.001 unknown protein Lus10001202 [exp] 136 / 9e-32 AT2G29620 144 / 6e-35 unknown protein Lus10005869 [exp] 135 / 2e-31 AT5G58880 144 / 6e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G068800.3 pacid=42811966 polypeptide=Potri.013G068800.3.p locus=Potri.013G068800 ID=Potri.013G068800.3.v4.1 annot-version=v4.1 ATGGGTATTGATGCAATGAGAATTAGAGTTCAAATCAGGAGATTTTTGGTGATTTCATTTCAATTATGTTATAGATCAGTTTGCAAACATCCATTTCTTG TGGGCATGGTTTGTTACTTGTTATTGTTGTATAGGTCATTTCCTTTTTTGTTTTCCCTTTTAGTCACTGCATCCCCTGTTTTGATTTGTACTGCCATTTT GCTTGGGACCCTTTTGAGTTTTGGGGAGCCAAATATACCTGAAGTTGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAACAAGTTAGCCATGAG ATTTCATATTTAAAGAAGGAAGGGGTTGCAGAGGATGCCACTTTTGTTGTTCAGAAAGATGAAAGCTTTAGTTTAGAGGGATTTGTAGGGAACAGAGATG TTGAAGAAGAGAGCTTGCTGGAGAACAAAAATAGGAAGATTGAGGTTCATGGCGATTCAGGAGATTATGTGCCGCTGATTGATGAAACTTCCCGAGAAGT TCAATTTGAGAAGCAAGTTGTTGAGGAAGTGGAGAGTGATTTTGATAATTTAGAGTTAGGAAAGAAGAGGGAGATTCAAGAGGAGAATCTTGGGATCAAA GAAGTGTTAAGTCATGCAGAGGGTGTCGAAGAACAATATTCTTTGCTTCAAAATTCAAGAGATGAGAATCTTGACGATGATAATTCTGTGGGAGAGTTTA TTGAAACTCATAATGGTTACTTGGAATTTTCTCAGGAATCATCTTGGAAACGTGCATACCATGATGATGAAGAGGATGATGACGAGGCTTCTGATTCTGG ATCTGATGGGGTGGAAAGCTCCTCTCCAGATGCTTCAATGGCAGACATTCTTCCAATGCTTGATGAGCTCCACCCACTTTTAGATGAGGAAGCTCCACAA CCAGCTAACATTTCCAATGATGGATCTGATGCTGGTTCAGAGGGGTCTCATAAGAGCGATGAGAGCAGTATTGAGTCAGAGGAGGATGTGGGAAACCAGG CAGATGAAGACGAAGACGGTGATGATGATAATGATAATGAAGAAGAAGCACAAGGCAGTAAAGAGGATGAAAGTAAATCTGCAATCAAATGGACAGAGGA CGACCAGAAAAACCTCATGGATTTAGGGACTTTAGAACTCGAAAGAAACCAGCGTTTGGAGAGTCTTATTGCAAGGAGAAGGGCTCGTAGAAACATGAGA TTGATGGCTGAGAAGAATCTTATAGACTTGGATGCTGCTGATATTCCCATCAACATTCCATCTATTTCAACAGCTAGGCACAACCCGTTTGATTTTCCTT ATGATGATGTTCCTGGGTCTGCTCCTTCTGTATTGTTGCCAAGACGAAATCCTTTTGACCTTCCCTATGACTCAAATGAAGAAAAGCCCGATCTTAAGGG AGATAGTTTTCAACAGGAATTCTCTGCAACTCAGCATAGGGAACCATTTTTCCGAAGGCATGAAAGTTTCAGCATTGGGCCATCAACTTTGGCGGGGACC AGGCATGATCTTCGATGGAAGCCATATTTTGTACCCGAACGATTTGCTACTGAAGGGACAAGCTATCACACTTTCCAGCGCCAATTAAGTGAAGCTAGCG AGTCAAAGGTGAGCTCAGTTCCAGATACCGAGTCAGTTAGTTCAGCTTTGGAGGAAGAGGACAAGAGGATCAATGAAGAAGATGTTTCTCAAGAAACAGA AATGATTTCCAATGTTGACCATGCTTCTCTCCTTGTCGAAAGGGGAAGTTTATCATCTGAAGAGGTAGATTCTGTGGAAGATGAACAGGTTGAGAAGAGT GATTTGCACCATGATGGGGCTGAATTTGCATTAGGGGACGTTGAAAACCACCACGAAATAGATTCTGGCTTGTCTGAATCAGGAGGGGTAACTCCTGAGG AGCTTAACACAAGTGAAATTCTTCTGCGTATGGGACATGGTGAAGAGGATTACAGCAGTAGATCAAGCCTATCCTCATTGTCAGAGATAGATGAAAAAAT ATGTGATGTGAATAGAGGATCAACAAGTCTGGAGCCAACAAATAGTCAGATTGAGGGCTCTCACATTTCCATCCAAACTTCACTTGATTCTGATTTTCAT TTTGTGAATGGGTTGGCAGATGATAATGAACACAGGGAGCCTGTTTTGGAGTCAAGAAATGATCATATTGACGAATGTGACATCTCAACGCAATCTTCTC TTGATTCAGATTTTCATTTTACAAGTCAGATGATGGATGGAAGTCAATACAGGGAGCCTGGTTTGGAGTCAACAGGCAATCAAATTGGGGATGCTGGCAT TTTGAAGGAAAGCTCAACAGAGTCTGATTCAAATGTTTTAAGTGGAATGGCAGATGACAATCAAGAACCTGTTTTGGAGCCAGGAGGCCATCATATTGAG GAACCTGGCATTTCATTACAAACTTCTCATAATTCAGATATCCATTTGACAAGTGCAGTGGTGGATGATGGTCAACATAGTGATCCTGTTTATGATTCAA GCCCCCCATCAATTGAGACTATTCTCTCCTTTTCCTCTCTTTCTTCCGACACACAAAGATCAGAAATGGGTTCACCTCTGGCAATGGCTGAATTTGCAGA TAAAGATTCTGAAGCGCATGCTGAGAACTTGGAGAAGGATACGTCTAGTTACCAAGTGATGCTTGAAGGCTCTTCACAAGCACACTCACCAGATGAAACT GAATTCAGATCAACAGGAGTTGCAGAAAATACTGGGAATGAGATTACAGAGCTTGGGTTCTCAGGAGCAGAGTCAAATTTTGATGGTCAAAATGGGTTTA CAAAGCCTGAATCAGCTGCTGAGAATTTCTCAGTTGATTCTTCTCCATCTCTATCAGACAATGGATCAGCAAAGGAGGTTGTAGCCGGTAAGGAAGAAAA CTCTCATCACAAAGAGGATCGACTGCACTCATCAAGTCTTGATGCAGAAATCATTGTTGATGGATATAAGCAGTTGGATTCTGCCTCTTCTAGTTATAAG ATGGCTTCTGAAGAGAGCAATTTGCCAGTACTGGAAAAAGATTATCCTCTACTGGTAGTTGAGCAGGTTTCAGTAGACACTAATTTATCTGCTTCAGAGG CTAAACCTGTCGAGGACCATGCAATTGGTATTGAAAAATCTTTTGGGCTTGAGCAGGATCAAGTCAGCTCAACAAGTTTTGATGTGGATATTCATGCTGA TGGCTTCCAAGCTGTGGGTGAGAAATTAGATCCAGTGGATTCTAATTCTCAGCATGTTCCTTCGAATGATTTACATTTGTCTGTGCATGAAGAAAGAGAG CCATCAGTGGTGGCTGAGCAAGTTAAGGGGACTCATCTAAATGTATCTTCTTTGGAGATGAAGCTTGTGGAGGAGCATTCATCAGAGAAGGGAGAAACCA TCCAATCTGAACAGGATCAAGTGCATTTATCAAGTTCTGATTCAGCCATTGGTGCTGGTTTTCACCAAGATGTGGATGTGACAGTTGTTTCTTCAGAATC TGGTCACCAAAATCCACTGTCTGAGGAAAAACCTCATCTTGAATTGGAGAAACAGCAGTCTTTGTCAGATAAATCCATGCTTGAACAATCTTTTAGCAAT CACGATGAACCTCGGGGACTATCTGTTACCATTTCCAACAACGAAAACATTCCAGAAGTCCACAATCCTGAAGAGAGAATTTCAAGAAGTATCACCTCCT CGATGTCAAATTTCACCTCAGACTCTCCCAATAGTCTACCATACAAATCACCAGATGGTGGAATGGATTTGAAAGATGATGTCCTTGATAAAATTGTATA TGAGGATTATCATCAGGTCTTAGAACACTCTAATTACCCAGGAGAAGCATATGGCCCCCCTGTTTCCGAGGAAAATATCAACGAAGATGAAGACGAGTTA AAGGAGATTGATGAGGGATTGTTGTCAGAATTGGATACAGTTGGGGACTTCAGTATAAAAGAAGTTGTTGGCGAGTCACTCCATGATGAACAAGTACCAG AAAATACTAGTGTTAGTCCTGAATTTGACTTCTTGCCAAAAAATTTAAGCCTGACAGAGGTCAAGCCAGAGCTCCCAGTCCTTGAAGTTAGATCAGTTGA AGATATAGACTTGGCTTTCAAGCAACTTCATGAAGGAGCAAATGTTGAGGAAGTCATCCTTCCAAGTATGGTTGAGGAGCAATTAGCTGAGGATGAATCT AAACATCAAACTGATTCAGACTTGCGAGTTGTTGAAGCAAGATCTTTAGAAGATATTCATTTTGCTATGAAGCAAATCTCAGAAGAGAATATTGAGGAAC TGGTGGATTCGAGGGATGCAACAACAGAAGCAAATGAAATGGGATCTGCCAAGGAGATCCCAGTCCTTGAAGTTAAAACAATCAAAGATGTTGACTTGGC TTTCAGGCAGCTTCATGAAGGAGTAGAAGTTGAGGAGATCATTGTTCCCAGTGCAATTGAGCAGCAGCTAGTCGTGGATGATACCAAAGATCTCGGGCAA ACCAGTTCAGCTTTGCCAGTTGTTGAAGCAAGATCTCTGGAGGATATTCATACCGCCATGAAGCAGGTTTCAGAAGGAAATATTGAGCAGCGGCCGAAGT TGCTGGATCCGAATGATAAACCAGGACATGAAGCAGCTTCTACCAAGGAGATGGATTCTAGGAATTCAGAAATAAATGAAGAGGATTCCACTGAGGATAT TGAATCAAGTACTGTAGAAGTAAATGAAGTGAGTTCCATCAAGGCTGTGGAATCAAGCATTGTGCAAGTAATTGAAGTGACTTCCATCAAGGAGAGTGAA CCGGATACTGCTGAGTTTGGTAGTGGAGAAACCAGCACAATTGCTCCTCGTGAATCAAAGCATGGATTCGATGAAACACCTGGAAATTCGAGTTCGAGCA TATCAGATACCAAAGGCAAGAAGGCAAAATCTCATAGTTCGAGTTCTAATTCGAGCTCGAGCTCGAGCTCTAGTGATTCAGATTGA
AA sequence Show only first row Show all	>Potri.013G068800.3 pacid=42811966 polypeptide=Potri.013G068800.3.p locus=Potri.013G068800 ID=Potri.013G068800.3.v4.1 annot-version=v4.1 MGIDAMRIRVQIRRFLVISFQLCYRSVCKHPFLVGMVCYLLLLYRSFPFLFSLLVTASPVLICTAILLGTLLSFGEPNIPEVEEEEEEKEEEEEEQVSHE ISYLKKEGVAEDATFVVQKDESFSLEGFVGNRDVEEESLLENKNRKIEVHGDSGDYVPLIDETSREVQFEKQVVEEVESDFDNLELGKKREIQEENLGIK EVLSHAEGVEEQYSLLQNSRDENLDDDNSVGEFIETHNGYLEFSQESSWKRAYHDDEEDDDEASDSGSDGVESSSPDASMADILPMLDELHPLLDEEAPQ PANISNDGSDAGSEGSHKSDESSIESEEDVGNQADEDEDGDDDNDNEEEAQGSKEDESKSAIKWTEDDQKNLMDLGTLELERNQRLESLIARRRARRNMR LMAEKNLIDLDAADIPINIPSISTARHNPFDFPYDDVPGSAPSVLLPRRNPFDLPYDSNEEKPDLKGDSFQQEFSATQHREPFFRRHESFSIGPSTLAGT RHDLRWKPYFVPERFATEGTSYHTFQRQLSEASESKVSSVPDTESVSSALEEEDKRINEEDVSQETEMISNVDHASLLVERGSLSSEEVDSVEDEQVEKS DLHHDGAEFALGDVENHHEIDSGLSESGGVTPEELNTSEILLRMGHGEEDYSSRSSLSSLSEIDEKICDVNRGSTSLEPTNSQIEGSHISIQTSLDSDFH FVNGLADDNEHREPVLESRNDHIDECDISTQSSLDSDFHFTSQMMDGSQYREPGLESTGNQIGDAGILKESSTESDSNVLSGMADDNQEPVLEPGGHHIE EPGISLQTSHNSDIHLTSAVVDDGQHSDPVYDSSPPSIETILSFSSLSSDTQRSEMGSPLAMAEFADKDSEAHAENLEKDTSSYQVMLEGSSQAHSPDET EFRSTGVAENTGNEITELGFSGAESNFDGQNGFTKPESAAENFSVDSSPSLSDNGSAKEVVAGKEENSHHKEDRLHSSSLDAEIIVDGYKQLDSASSSYK MASEESNLPVLEKDYPLLVVEQVSVDTNLSASEAKPVEDHAIGIEKSFGLEQDQVSSTSFDVDIHADGFQAVGEKLDPVDSNSQHVPSNDLHLSVHEERE PSVVAEQVKGTHLNVSSLEMKLVEEHSSEKGETIQSEQDQVHLSSSDSAIGAGFHQDVDVTVVSSESGHQNPLSEEKPHLELEKQQSLSDKSMLEQSFSN HDEPRGLSVTISNNENIPEVHNPEERISRSITSSMSNFTSDSPNSLPYKSPDGGMDLKDDVLDKIVYEDYHQVLEHSNYPGEAYGPPVSEENINEDEDEL KEIDEGLLSELDTVGDFSIKEVVGESLHDEQVPENTSVSPEFDFLPKNLSLTEVKPELPVLEVRSVEDIDLAFKQLHEGANVEEVILPSMVEEQLAEDES KHQTDSDLRVVEARSLEDIHFAMKQISEENIEELVDSRDATTEANEMGSAKEIPVLEVKTIKDVDLAFRQLHEGVEVEEIIVPSAIEQQLVVDDTKDLGQ TSSALPVVEARSLEDIHTAMKQVSEGNIEQRPKLLDPNDKPGHEAASTKEMDSRNSEINEEDSTEDIESSTVEVNEVSSIKAVESSIVQVIEVTSIKESE PDTAEFGSGETSTIAPRESKHGFDETPGNSSSSISDTKGKKAKSHSSSSNSSSSSSSSDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17910			unknown protein		Potri.013G068800 [exp]	0	1
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	2.44	0.8909
AT3G14172			unknown protein		Potri.001G164900 [exp]	2.82	0.8736
AT1G70750			Protein of unknown function, D...		Potri.008G132200 [exp]	6.08	0.8325
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.014G178300 [exp]	7.54	0.8481
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	9.16	0.8858
AT1G18190		GC2	golgin candidate 2 (.1)		Potri.015G039800 [exp]	11.61	0.8503
AT2G27740			Family of unknown function (DU...		Potri.009G147500 [exp]	14.28	0.8538
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	14.89	0.8759
AT3G07010			Pectin lyase-like superfamily ...		Potri.014G178100 [exp]	15.58	0.8396
AT5G39380			Plant calmodulin-binding prote...		Potri.017G090200 [exp]	16.43	0.8716

Compare expression of checked genes

Potri.013G068800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.