Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27110 97 / 1e-22 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196300 [exp] 114 / 1e-28 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.009G158400 [exp] 112 / 1e-27 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.008G011800 [exp] 97 / 2e-22 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.012G097200 [exp] 86 / 4e-20 AT2G27110 56 / 4e-09 FAR1-related sequence 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026767 [exp] 73 / 1e-15 AT2G27110 144 / 1e-40 FAR1-related sequence 3 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G068900.1 pacid=42811623 polypeptide=Potri.013G068900.1.p locus=Potri.013G068900 ID=Potri.013G068900.1.v4.1 annot-version=v4.1 ATGGAGAAAATGGAGGATGGTGATTCCCTATACCTGCAGCTTCACAAGCTATCATCAGTAGCAACAAAGGAAGAAGATGTTGAGCACATCCTTACTTCTC TCTGGAAAACCAGAAGAACCGGTCTCCCTTCTCCCCTTAAATCCCGCTTTCAATCTCTCCTCGATATCCCTTCCCTTCCTCAACTCGATCCCGTTTTGGC ATGCCTTCGTTCGATTATCAGAAAATGTGTACATGAGAATATGAGCAGTGATGAGCTGCTGAAGCTGTTTCCACCTGATTTATCCCTTGATTTGCAAACC ACTCTTATCACTTTGCTCCTCAAGTATCAAATTCAATGGAAGCAGGATGATTTAGCTACAACCGAACAGCATTCGTTGCCGAGGACTAGTGTTTTTGGGA TTAGTGGTCCGCCGTCGTTTACGGCTGAGGTTCCGACGCAGCTTTGGCCTCGTCAAGATGATACTAATGGACGTTTTAATCATAATGGTTTTGAGGAGCC TACGTCAATGATTGCTGAAACTGCTGCCTCAGTTTTTGCCCAACATCATGTTACTGCTCTTGACAACATGGCTAATGTACCTCGCCTCAAATCAATGACA TGGACCGCAGAGAATCGCAACCCTTCATCAGCTAATAGAGTTGCCATCATAACTCTCAAGCTTCAAGATTACAGCAAGTCTTCTTCAGGAGAAACGGAAG TGAAATTTCAGCTTAGCAGAGACACGCTTGAAGCTATGTTAAGATCAATGACCTACATCAATGAGCAGCTTTCTAGCAGGGTTGGGAGCTCTTCTGGACC AGCTCAGAAGAAGCAAAAGCAGTAG
AA sequence Show only first row Show all	>Potri.013G068900.1 pacid=42811623 polypeptide=Potri.013G068900.1.p locus=Potri.013G068900 ID=Potri.013G068900.1.v4.1 annot-version=v4.1 MEKMEDGDSLYLQLHKLSSVATKEEDVEHILTSLWKTRRTGLPSPLKSRFQSLLDIPSLPQLDPVLACLRSIIRKCVHENMSSDELLKLFPPDLSLDLQT TLITLLLKYQIQWKQDDLATTEQHSLPRTSVFGISGPPSFTAEVPTQLWPRQDDTNGRFNHNGFEEPTSMIAETAASVFAQHHVTALDNMANVPRLKSMT WTAENRNPSSANRVAIITLKLQDYSKSSSGETEVKFQLSRDTLEAMLRSMTYINEQLSSRVGSSSGPAQKKQKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.013G068900 [exp]	0	1
AT4G14450		ATBET12	unknown protein		Potri.010G073900 [exp]	7.61	0.8830	Pt-ATBET12.2
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	8.77	0.9019	VFCYSPRO.1
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.001G182000 [exp]	15.58	0.8510
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	23.74	0.8811
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.010G236100 [exp]	30.19	0.8750
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	30.91	0.8783
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Potri.010G045900 [exp]	36.48	0.8672	ATTAP1.1
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	37.81	0.8620
AT1G05675			UDP-Glycosyltransferase superf...		Potri.017G032300 [exp]	37.88	0.8734
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	40.98	0.8577	Pt-DGD2.1

Compare expression of checked genes

Potri.013G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.