Plant FIBer expression Database

Potri.013G069000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03610 441 / 3e-157 ELMO/CED-12 family protein (.1)
AT1G03620 251 / 4e-83 ELMO/CED-12 family protein (.1)
AT3G60260 247 / 9e-82 ELMO/CED-12 family protein (.1.2.3.4)
AT1G67400 245 / 2e-80 ELMO/CED-12 family protein (.1)
AT2G44770 241 / 2e-79 ELMO/CED-12 family protein (.1)
AT3G43400 178 / 2e-55 ELMO/CED-12 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G136200
[exp]
265 / 1e-87 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
Potri.002G138700
[exp]
252 / 2e-83 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4)
Potri.014G049800
[exp]
252 / 2e-83 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4)
Potri.010G060700
[exp]
249 / 4e-82 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1)
Potri.008G175301
[exp]
238 / 5e-78 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009523
[exp]
399 / 1e-140 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1)
Lus10020344
[exp]
394 / 2e-138 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
Lus10024285
[exp]
252 / 2e-83 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1)
Lus10037017
[exp]
251 / 7e-83 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1)
Lus10015790
[exp]
246 / 6e-81 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1)
Lus10039805
[exp]
241 / 1e-79 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1)
Lus10018574
[exp]
239 / 5e-78 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1)
Lus10003841
[exp]
241 / 5e-77 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04727 ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence
>Potri.013G069000.4 pacid=42812734 polypeptide=Potri.013G069000.4.p locus=Potri.013G069000 ID=Potri.013G069000.4.v4.1 annot-version=v4.1
ATGACGACAAGAACAATGAGGAGGAGACTACATCATGGTGACGTTGATGGAAAAAGGAACGACGAACTTTTTGATTCTTCTGAGGTTGATGGTTTAAGCG
AACCTTTACTCGGCAATCACATTGATGATTCTTCAGTTCCCGTACCCATACTTGAAGATCTATGGGACGATGAACGGAGGAAGCAGCACATTCACTGGAC
TTTTGTGTTTTCGCAATTGATTGCGCAGTGGGCGCAATGGTTAGCAAATATTGTGCTAGGTTCTGGATCACTTATTGCACGGCTTTTGCCTCTTTCTTCT
CTCAGTCAAAATGGATCAAACAGGAAGCTTCTTCAACCTTCTCTTAGTCCTTTACAGGAAGCAAGACTTCGAGATCTGCAGCAAAGGTTGGGAGTTCCCT
TTGATGGTTCTCAGGCAGAGCATCAAGATGCACTTAAACAATTATGGAGGCTTGCTTACCCCGATAGAGAGCTCCCGTCTTTAAAGTCTGAGCTTTGGAA
AGATATGGGTTGGCAAGGCTCAGACCCATCAACTGATTTTCGGGGTGGAGGGTTTATATCACTGGAGAATCTGATCTTTTTTGCCAAGAAATATCCGGAC
TCATTCCAGAGATTGTTGAACAAAAGAGATGGAACTAGAGCTGAGTGGGAGTATCCCTTTGCTGTGGCTGGCGTTAACATTTCTTTTATGCTGGCACAAA
TGTTGGATCTTCAGACAGGGAAGCCATCCACTCTGGCAGGAGTTAGATTCTTAGAACTACTAGCAGACGATGAAATGGCATTTGACAACCTTTATTGCAT
AGCATTTCAAATGATGGATGCTCAGTGGCTTGCAAAGCGGGCTTCATATATGGAATTTAATGATGTTTTGAAGTCTACAAGGACGCAGTACGACAATACA
GTGTAA
AA sequence
>Potri.013G069000.4 pacid=42812734 polypeptide=Potri.013G069000.4.p locus=Potri.013G069000 ID=Potri.013G069000.4.v4.1 annot-version=v4.1
MTTRTMRRRLHHGDVDGKRNDELFDSSEVDGLSEPLLGNHIDDSSVPVPILEDLWDDERRKQHIHWTFVFSQLIAQWAQWLANIVLGSGSLIARLLPLSS
LSQNGSNRKLLQPSLSPLQEARLRDLQQRLGVPFDGSQAEHQDALKQLWRLAYPDRELPSLKSELWKDMGWQGSDPSTDFRGGGFISLENLIFFAKKYPD
SFQRLLNKRDGTRAEWEYPFAVAGVNISFMLAQMLDLQTGKPSTLAGVRFLELLADDEMAFDNLYCIAFQMMDAQWLAKRASYMEFNDVLKSTRTQYDNT
V

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03610 ELMO/CED-12 family protein (.1... Potri.013G069000
[exp]
0 1
AT5G39785 Protein of unknown function (D... Potri.004G126800
[exp]
16.34 0.7622
AT5G02970 alpha/beta-Hydrolases superfam... Potri.006G131300
[exp]
20.12 0.7564
AT4G36750 Quinone reductase family prote... Potri.005G126200
[exp]
21.16 0.7068
AT1G11480 eukaryotic translation initiat... Potri.007G119200
[exp]
32.12 0.6792
AT3G49930 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.004G118100
[exp]
37.28 0.7155
AT3G14067 Subtilase family protein (.1) Potri.003G067000
[exp]
42.95 0.6473
AT2G38670 PECT1 phosphorylethanolamine cytidyl... Potri.006G113900
[exp]
47.11 0.6232
AT5G12850 C3HZnF PEI1 CCCH-type zinc finger protein ... Potri.001G258400
[exp]
61.43 0.7036
AT4G16144 AMSH3 associated molecule with the S... Potri.010G141100
[exp]
62.73 0.6309
AT1G55620 CLCF, ATCLC-F, ... chloride channel F (.1.2) Potri.001G472700
[exp]
62.92 0.6565

Potri.013G069000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.