Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03620 491 / 5e-171 MATE efflux family protein (.1) AT5G17700 484 / 1e-168 MATE efflux family protein (.1) AT1G33110 444 / 9e-153 MATE efflux family protein (.1.2) AT1G33100 442 / 5e-152 MATE efflux family protein (.1) AT1G33080 434 / 6e-149 MATE efflux family protein (.1.2) AT1G33090 431 / 1e-147 MATE efflux family protein (.1) AT5G65380 387 / 1e-130 MATE efflux family protein (.1) AT1G47530 376 / 3e-126 MATE efflux family protein (.1) AT5G10420 363 / 2e-121 MATE efflux family protein (.1) AT5G44050 363 / 3e-121 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069400 [exp] 782 / 0 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 767 / 0 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 664 / 0 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 657 / 0 AT3G03620 521 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 471 / 1e-163 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.007G010200 [exp] 412 / 3e-140 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 402 / 3e-136 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 392 / 3e-132 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.012G144900 [exp] 374 / 7e-125 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 475 / 7e-165 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10020307 [exp] 397 / 4e-135 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10002645 [exp] 396 / 6e-134 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 393 / 8e-133 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 390 / 4e-131 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 387 / 5e-131 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 370 / 6e-124 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 378 / 1e-123 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 366 / 4e-122 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 363 / 6e-121 AT1G47530 521 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.013G069250.1 pacid=42812449 polypeptide=Potri.013G069250.1.p locus=Potri.013G069250 ID=Potri.013G069250.1.v4.1 annot-version=v4.1 ATGGATAATTCAATGGAAGAGAGGCTTGTTTCGCCGGAAGAACTTAACAGTGATGACCTGAAGAAGAGGGTTTGGAAGGAGTTCGGGAAGTTATGGGGGA TTGCCTTTCCTGGAACCGTGGCACGATTGACTTCATTTGGAATGATAGTTGTTACACAATTGTTCATGGGGCACGTTAGCGAATTGGATCTTGCAGCATT TGGCCTCCAACAGAGCATTTTGATACGCTTTGTAAATGGCATATTGATTGGCATGTCAAGTGCGACTGAGACCTTATGCGGCCAAGCGTATGGAGCTGGA CAATACCACATGATGGGTATTTACTTGCAGCGATCATGGATCATTGATGGTGTAACTGCAACCATCTTGCTTCCCCTCTTCATTTTCACAGCACCCATAT TAAAACTACTTGGACAAGATGAGGATATAGCAATAGAAGCTGGGAAAATGTCGCTATGGTTCATTCCCATCCTCTACTATTATGTCTTGAGCTTGACCAT CCAAATGTACTTGCAAGCACAACAAAAAAACAAGATTGTCGGGTTGTTTACCGCTTCCTCCTTTCTGGTTCATGTGTTTTTGTCCTGGTTATTTGTGATC AAACTTGATTTAGGAGTTGCTGGTGCCATGAGTGCATTCATCATTTCAGCTTGGTTGCTGGTTATTGGAGAGTTTGTCTATATCTTTGGAGGTTGGTGTC CTCATACATGGAAAGGCTTTACTAAAGCTGCTTTTGCTGATATGTTACCTCTAGTAAAGCTCTCATTATCCTCCGGAGTTATGATTTGCTTAGAGTTTTG GTACACCTCTATTCTTGTCTTGTTAGCTGGATATATGAAGAATGCAACTGTTGCTATATCTGCTTTCTCCATTTGCATCAACATCTATGGATGTGATTTC ATGATTTGCCTTGGGTTTTTAGGTGCTTCAAGCGTGCGTGTATCAAATGAATTGGGAAAGGGCAATGCTAAAGCTGCAAGATTTTCTATCAAAGTTGCCC TCCTTACTTCAGTAATTATAGGAATTATCCTCTGGATTTTGTGCTTGGTCTTCAGTAATGAGATTGCATACTTGTTCACAAGTAATGAGGAAATTGCAGA ATCTGTGTCAAGGCTTCATGTTCTACTTGCGTTCTCAGTGTTGTTAAATAGTATTTATCCAGTACTTTCAGGCGTAGCCATAGGAGCTGGTGTGCAAAGT ACTGTTGCGTTTCTCAACTTGGGAAGCTATTATGTGATTGGAGTGCCTATAGGGCTTGTGCTTGGATATGTAGCTCATCTTCAGATCCAGGGTTTGTGGA TTGGATTGTTGACTGGAGTTGTAGTTCTAACACTTTTGCTATCCTACCTTACATGGAGGATTGATTGGGATGAACAGGTACACAAGGCAGAAGAACGTCT TGGTCGATTTTTCTTGGAACCACCGAAGCAATCTGTTGAAAACTCCAATCTTGCTTGA
AA sequence Show only first row Show all	>Potri.013G069250.1 pacid=42812449 polypeptide=Potri.013G069250.1.p locus=Potri.013G069250 ID=Potri.013G069250.1.v4.1 annot-version=v4.1 MDNSMEERLVSPEELNSDDLKKRVWKEFGKLWGIAFPGTVARLTSFGMIVVTQLFMGHVSELDLAAFGLQQSILIRFVNGILIGMSSATETLCGQAYGAG QYHMMGIYLQRSWIIDGVTATILLPLFIFTAPILKLLGQDEDIAIEAGKMSLWFIPILYYYVLSLTIQMYLQAQQKNKIVGLFTASSFLVHVFLSWLFVI KLDLGVAGAMSAFIISAWLLVIGEFVYIFGGWCPHTWKGFTKAAFADMLPLVKLSLSSGVMICLEFWYTSILVLLAGYMKNATVAISAFSICINIYGCDF MICLGFLGASSVRVSNELGKGNAKAARFSIKVALLTSVIIGIILWILCLVFSNEIAYLFTSNEEIAESVSRLHVLLAFSVLLNSIYPVLSGVAIGAGVQS TVAFLNLGSYYVIGVPIGLVLGYVAHLQIQGLWIGLLTGVVVLTLLLSYLTWRIDWDEQVHKAEERLGRFFLEPPKQSVENSNLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03620			MATE efflux family protein (.1...		Potri.013G069250 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G036000 [exp]	2.44	0.9726
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048900 [exp]	3.46	0.9737
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	4.12	0.9585
					Potri.005G228550 [exp]	5.09	0.9610
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	5.29	0.9691	GC1.1
					Potri.001G001000 [exp]	6.32	0.9676
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152900 [exp]	6.92	0.9649
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.014G029700 [exp]	7.74	0.9675	2,Pt-LHCA5.2
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	9.89	0.9608
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.004G088100 [exp]	10.09	0.9439

Compare expression of checked genes

Potri.013G069250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.