Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03620 533 / 0 MATE efflux family protein (.1) AT5G17700 518 / 0 MATE efflux family protein (.1) AT1G33110 481 / 4e-167 MATE efflux family protein (.1.2) AT1G33100 476 / 3e-165 MATE efflux family protein (.1) AT1G33090 470 / 4e-163 MATE efflux family protein (.1) AT1G33080 466 / 3e-161 MATE efflux family protein (.1.2) AT5G65380 425 / 3e-145 MATE efflux family protein (.1) AT1G47530 394 / 4e-133 MATE efflux family protein (.1) AT5G44050 392 / 2e-132 MATE efflux family protein (.1) AT5G10420 387 / 1e-130 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069400 [exp] 865 / 0 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 800 / 0 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.015G139400 [exp] 709 / 0 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 702 / 0 AT3G03620 521 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 505 / 6e-177 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.007G010200 [exp] 448 / 3e-154 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 433 / 2e-148 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 427 / 5e-146 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.015G147600 [exp] 393 / 1e-132 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 512 / 2e-179 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10015903 [exp] 430 / 8e-147 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 427 / 4e-146 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 427 / 4e-146 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 426 / 6e-146 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10020307 [exp] 421 / 3e-144 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 403 / 1e-136 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 407 / 7e-135 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 389 / 2e-131 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 389 / 5e-131 AT1G47530 525 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.013G069600.1 pacid=42812646 polypeptide=Potri.013G069600.1.p locus=Potri.013G069600 ID=Potri.013G069600.1.v4.1 annot-version=v4.1 ATGGATAATTCAACGGAAGAGAGGCTTCTTTTGCTGGAAGAATTTGACAGGGAGGACCTGAAGAAGAGGGTTTGGAATGAATCCAAGAAGCTATGGAGGA TTGCATTTCCTGGAATAATAGCACGAGTGACTTCATTTGGGATGATTGTGGTGACACAGTTATTCATGGGGCACATTAGCGAATTGGATCTTGCAGCGTT TGGCCTACAGCAGAGCATTTTGTTACGGTTTGTGAATGGCATATTGATTGGCATGTCAAGTGCGACTGAGACCTTATGCGGGCAAGCGTATGGAGCTGAA CAATACCACATGATGGGTGTTTACTTGCAGAGATCATGGATCATTGATGGTGTAACTGCAACCATCTTGCTACCCCTCTTCATTTTTACAACACCGATAT TAAGACTAATTGGGCAAGAGGAGAATATAGCAATAGAAGCTGGAAAAATCTCCCTTTGGTTCATTCCCATCCTCTACTATTTTGTCTTTAGCTTGACCAT CCAAATGTACTTGCAAGCACAACAAAAAAACAAGATTGTCGGGTGGTTTTCTGCTTCCTCCTTTCTGCTTCATGTGCTTTTGTCCTGGTTATTTGTGATC AAACTTGGTTTTGGTCTTGCTGGTGCCATGAGTTCATTCATCATATCATCTTGGTTGCTCGTTATTGGAGAGTTTGTGTACATCTTTGGAGGTTGGTGTC CTAATACATGGAAAGGCTTTACTAAAGCTGCATTTGCTGATATGTTACCTCTAATAAAGCTCTCAATATCCTCCGGAGTCATGATTTGCTTAGAATTATG GTACTCCTCTATTCTTGTCGTATTAGCTGGATATATGAAGAATGCAACTATTGCAATATCTGCTTTCTCCATTTGCCTCAACATCAATGGATGGGAATTC ATGGTCTGCCTTGGGTTTTTAGGTTCTTCATGTGTGCGCATATCAAATGAATTGGGAAGGGGCAATGCCAAAGCTGCAAAATTTTCTATCAAGGTTGCCC TTGGTACTTCGATAATTATCGGAATTATCTTCTGGGTTTTGTGCATGGTCTTTAGTCGGGAAATTTCATACTTGTTTACGAGTAGTGAGGAAATAGCAGA ATCTGTGTTCAGGCTTCATGTTCTACTAGCATTCTCAATGCTGTTGAATAGTATTTATCCAGTACTCACAGGTGTAGCTGTAGGTGCTGGTGTGCAAAGT ATGGTTGCATTTGTCAACTTGGGGAGCTATTATGCTATTGGGTTGCCGGTAGGAATTCTTCTTGGATATGTAGCGCATCTTCAGGTCACGGGTTTGTGGA TTGGATTGTTGAGTGGAGTCGTAGTCCAAACACTTGTGCTATCCTACCTTACATGGAAGATTGATTGGAATGAACAGGTAAACAAGGCATCAGAGCGTCT TGGTCGATTTTTTATTGAAACAACAAAGGGATCTGATGAAAGCTCCAATCTTTCTTGA
AA sequence Show only first row Show all	>Potri.013G069600.1 pacid=42812646 polypeptide=Potri.013G069600.1.p locus=Potri.013G069600 ID=Potri.013G069600.1.v4.1 annot-version=v4.1 MDNSTEERLLLLEEFDREDLKKRVWNESKKLWRIAFPGIIARVTSFGMIVVTQLFMGHISELDLAAFGLQQSILLRFVNGILIGMSSATETLCGQAYGAE QYHMMGVYLQRSWIIDGVTATILLPLFIFTTPILRLIGQEENIAIEAGKISLWFIPILYYFVFSLTIQMYLQAQQKNKIVGWFSASSFLLHVLLSWLFVI KLGFGLAGAMSSFIISSWLLVIGEFVYIFGGWCPNTWKGFTKAAFADMLPLIKLSISSGVMICLELWYSSILVVLAGYMKNATIAISAFSICLNINGWEF MVCLGFLGSSCVRISNELGRGNAKAAKFSIKVALGTSIIIGIIFWVLCMVFSREISYLFTSSEEIAESVFRLHVLLAFSMLLNSIYPVLTGVAVGAGVQS MVAFVNLGSYYAIGLPVGILLGYVAHLQVTGLWIGLLSGVVVQTLVLSYLTWKIDWNEQVNKASERLGRFFIETTKGSDESSNLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03620			MATE efflux family protein (.1...		Potri.013G069600 [exp]	0	1
AT5G36160			Tyrosine transaminase family p...		Potri.017G013800 [exp]	4.58	0.9297
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	6.92	0.9210
					Potri.013G069675 [exp]	9.00	0.9107
AT3G19660			unknown protein		Potri.017G109800 [exp]	9.21	0.9313
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.015G139900 [exp]	9.48	0.9097
AT2G33450			Ribosomal L28 family (.1)		Potri.008G169800 [exp]	9.79	0.9379
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Potri.013G037700 [exp]	10.95	0.9139
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.006G226100 [exp]	12.96	0.8854
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.006G208300 [exp]	13.00	0.9195
AT2G42130			Plastid-lipid associated prote...		Potri.016G045900 [exp]	13.96	0.9177

Compare expression of checked genes

Potri.013G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.