Plant FIBer expression Database

Potri.013G069675 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G069675.1 pacid=42811749 polypeptide=Potri.013G069675.1.p locus=Potri.013G069675 ID=Potri.013G069675.1.v4.1 annot-version=v4.1
ATGGTGCGCCTACAAGTTGTGGATTCGGCGGTTCGCACGCCTTCTTCCATCAGTGAACAAGCGACCAACCATTCTTCGTTTCTCCCTTTTCTTTTTCTAT
TCACCAATTTTGTTTTTCTTATAAACGAATACCTATGGAAAGCACAGAGAGAAACTAAACACACTGCACTCTTAGCTACTGCCTTGTTAACAAGCATACG
TTCTCCCCTCTCTCTATCTCTTTCTCCCTGTGGACATTACTCTAACTTCGAAGCAAGCTTCAATCGGTTTCAGCCTCGAAGAACACCTGAAAGCTACTCG
CTATACTCCCTTGTTAACAAAGACGCATTCCCTTCTCGCTTTCCATTTCTCGAGTCGACAATAAACCAAGGCTGA
AA sequence
>Potri.013G069675.1 pacid=42811749 polypeptide=Potri.013G069675.1.p locus=Potri.013G069675 ID=Potri.013G069675.1.v4.1 annot-version=v4.1
MVRLQVVDSAVRTPSSISEQATNHSSFLPFLFLFTNFVFLINEYLWKAQRETKHTALLATALLTSIRSPLSLSLSPCGHYSNFEASFNRFQPRRTPESYS
LYSLVNKDAFPSRFPFLESTINQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G069675
[exp]
0 1
AT2G20740 Tetraspanin family protein (.1... Potri.006G241400
[exp]
1.41 0.9235
AT4G35760 NAD(P)H dehydrogenase (quinone... Potri.005G106500
[exp]
7.48 0.9186
AT3G03620 MATE efflux family protein (.1... Potri.013G069600
[exp]
9.00 0.9107
AT1G63245 CLE14 CLAVATA3/ESR-RELATED 14 (.1) Potri.015G139900
[exp]
29.84 0.8696
AT4G39250 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-... Potri.009G117200
[exp]
33.36 0.8927
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Potri.017G013900
[exp]
34.11 0.9030 AMT2
AT2G43840 UGT74F1 UDP-glycosyltransferase 74 F1 ... Potri.007G117200
[exp]
37.01 0.8973 Pt-ZOG1.9
AT5G36160 Tyrosine transaminase family p... Potri.017G013800
[exp]
51.43 0.8780
AT5G22355 Cysteine/Histidine-rich C1 dom... Potri.016G057800
[exp]
52.82 0.8842
AT4G14480 Protein kinase superfamily pro... Potri.008G163800
[exp]
54.65 0.8685

Potri.013G069675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.