Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33110 655 / 0 MATE efflux family protein (.1.2) AT1G33100 644 / 0 MATE efflux family protein (.1) AT1G33090 644 / 0 MATE efflux family protein (.1) AT1G33080 631 / 0 MATE efflux family protein (.1.2) AT5G65380 449 / 6e-155 MATE efflux family protein (.1) AT5G44050 445 / 4e-153 MATE efflux family protein (.1) AT5G10420 433 / 1e-148 MATE efflux family protein (.1) AT5G17700 417 / 6e-142 MATE efflux family protein (.1) AT1G47530 412 / 1e-140 MATE efflux family protein (.1) AT4G00350 412 / 1e-139 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069600 [exp] 485 / 8e-169 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 482 / 8e-168 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 474 / 8e-165 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.007G010200 [exp] 469 / 2e-162 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 468 / 4e-162 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 461 / 2e-159 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 460 / 3e-158 AT3G03620 521 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 431 / 8e-148 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.019G063500 [exp] 427 / 2e-145 AT3G26590 681 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 746 / 0 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10020307 [exp] 622 / 0 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10002645 [exp] 474 / 2e-164 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 471 / 2e-163 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 466 / 5e-161 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 460 / 2e-159 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 436 / 3e-149 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 436 / 7e-149 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 421 / 1e-143 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 418 / 1e-142 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.013G069700.1 pacid=42811692 polypeptide=Potri.013G069787.1.p locus=Potri.013G069700 ID=Potri.013G069700.1.v4.1 annot-version=v4.1 ATGGAGGGGAAGATCAACGAAAAGCTTTTGAGAAAAGGAGGAGAGGTAGATGCTGAGGAATTGAGGTTCAAGGACAAGTTATGGACTGAGACCAAGAAGA TGTGGGTTGTTGCTGGTCCTGCTATTTTCACCAGATTCTCTACTTTCGGGATAAATGTAGTCAGTCAAGCATTTATTGGGCATATCGGCTCCACAGAACT AGCTGCATACTCGCTTGTGTTCACAGTCCTTTTGAGGTTTTCCAATGGGATCCTGCTTGGCATGGCTAGTGCGTTGGAAACTCTCTGCGGGCAAGCCTTT GGTGCAAAGCAATATCATATGCTTGGAGTATATCTCCAAAGATCATGGATAGTTTTAATATTATCAGCTGTGCTACTTCTTCCTCTATTTTTCTTTACAT CTTCACTTTTGAAGGCTCTGGGCCAGGAGGATTATATTGCGGAAGTATCTGGAAATATCTCCCTGTGGTTAATCCCTGTGATGTTTTCCTTCATTCCGTC CTTCACCTGCCAAATGTTCCTGCAAGCGCAGAGCAAGAACATGATTATTGCATACTTGGCAGCACTTACATTAGTAATCCACGTCTTCCTTTCATGGCTA TTAACTGTCAAATACAAGTTTGGCATCCCGGGAGCAATGATGTCGACAATTTTGGCATATTGGATACCAAATATTGGTCAGCTTATGTTTGTTACCTGTG GAGGTTGCCGTGAGACATGGAAAGGATTCTCGACCTTAGCTTTCAAAGATCTCTGGCCTGTCATCAAGCTTTCTTTGTCATCTGGTGTTATGCTTTGCCT CGAGCTCTGGTACAACACAGTGCTGGTTCTTTTAACAGGAAACATGAAAAATGCGGAGGTTGCTATCGACGCTCTTTCTATCTGCCTCAACATCAATGGA TGGGAAATGATGATATCTCTCGGTTTCTTGGCTGCTGCAAGTGTTCGAGTGTCAAATGAACTTGGGAGAGGGAGCTCAAAAGCTGCAAAGTTCTCGATCG TGGTGACAGTTCTTACATCATTTTCAATCGGCCTTCTACTGTTTTTGTTATTCTTATTCGCCAGAGGAAATCTTGCTTACATCTTTACTACAAGTCACGA GGTGGCCAGTGCTGTCGCAAATCTTTCACCGCTACTGGCTTTCTCCATACTTTTGAACAGTGTACAACCAGTGCTCTCCGGAGTTGCTGTTGGGGCTGGG TGGCAGAGCATTGTAGCGTACATTAATATAGCGTGCTACTACTTGGTCGGAATTCCTATTGGAGTTGTGCTTGGTTATGTCATGGATATGCAAGTCAAAG GTGTTTGGATTGGGATGTTGATTGGGACATTTATTCAAACTGTTGTTCTACTTATAGTCACCTACAGAACTGACTGGGAAAAACAGGTAATTGTTGCCCA TAACCAGATCAACAAGTGGTTTGTAGCTGATTCTGAAGAAACAAGCACCCAAGTTGCATGA
AA sequence Show only first row Show all	>Potri.013G069700.1 pacid=42811692 polypeptide=Potri.013G069787.1.p locus=Potri.013G069700 ID=Potri.013G069700.1.v4.1 annot-version=v4.1 MEGKINEKLLRKGGEVDAEELRFKDKLWTETKKMWVVAGPAIFTRFSTFGINVVSQAFIGHIGSTELAAYSLVFTVLLRFSNGILLGMASALETLCGQAF GAKQYHMLGVYLQRSWIVLILSAVLLLPLFFFTSSLLKALGQEDYIAEVSGNISLWLIPVMFSFIPSFTCQMFLQAQSKNMIIAYLAALTLVIHVFLSWL LTVKYKFGIPGAMMSTILAYWIPNIGQLMFVTCGGCRETWKGFSTLAFKDLWPVIKLSLSSGVMLCLELWYNTVLVLLTGNMKNAEVAIDALSICLNING WEMMISLGFLAAASVRVSNELGRGSSKAAKFSIVVTVLTSFSIGLLLFLLFLFARGNLAYIFTTSHEVASAVANLSPLLAFSILLNSVQPVLSGVAVGAG WQSIVAYINIACYYLVGIPIGVVLGYVMDMQVKGVWIGMLIGTFIQTVVLLIVTYRTDWEKQVIVAHNQINKWFVADSEETSTQVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33110			MATE efflux family protein (.1...		Potri.013G069700 [exp]	0	1
AT4G37470			alpha/beta-Hydrolases superfam...		Potri.007G052000 [exp]	2.00	0.9373
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.008G135600 [exp]	2.00	0.9455
AT2G37660			NAD(P)-binding Rossmann-fold s...		Potri.006G086800 [exp]	4.89	0.9287
AT4G05090			Inositol monophosphatase famil...		Potri.004G033200 [exp]	5.47	0.9310
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	7.07	0.9155
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	9.16	0.9362
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.016G040200 [exp]	11.09	0.9434	LYC.2
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.006G208300 [exp]	11.61	0.9247
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125351 [exp]	15.87	0.9336
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142700 [exp]	17.94	0.9008	HNL.4

Compare expression of checked genes

Potri.013G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.