Plant FIBer expression Database

Potri.013G070001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03250 375 / 5e-124 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
AT5G17310 369 / 1e-121 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2)
AT3G03600 261 / 3e-83 RPS2 ribosomal protein S2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G144700
[exp]
372 / 8e-123 AT5G17310 782 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.004G074400
[exp]
369 / 1e-121 AT5G17310 759 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.004G074750
[exp]
108 / 2e-27 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.004G074602
[exp]
53 / 1e-08 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041971
[exp]
693 / 0 AT5G17310 332 / 6e-107 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10020788
[exp]
363 / 6e-119 AT5G17310 781 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10007370
[exp]
364 / 1e-116 AT5G17310 785 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10010957
[exp]
308 / 2e-98 AT3G03250 676 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Lus10031365
[exp]
301 / 6e-96 AT3G03250 662 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF00318 Ribosomal_S2 Ribosomal protein S2
CL0110 GT-A PF01704 UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence
>Potri.013G070001.1 pacid=42811515 polypeptide=Potri.013G070001.1.p locus=Potri.013G070001 ID=Potri.013G070001.1.v4.1 annot-version=v4.1
ATGACGCTCCATTCAATAATAATCCAAAAGCTACTAACCACAAACGCCCATATAGGGCGGCGAGTGGCAGCCCACCACTTGAAAATTTACACTTATGGAA
TGCGTAATCAAATCTCCATTATCGACTCCGATAAAACTCTCATCTGTCTCCGGAATGCTGCCAGTTTCATTTCTCATTTGGCGCGTGATAAGAACGCAAG
GTTCATGTTTGTGAATACGAATCTTTTGTTTGATGAGATAGTGGAGCAAATGACAAAGAAGATGGGGATTTATAGCCCAAGAGATAACATTATGTGGAGA
ATGGGTGGTTTCTTGACTAATAGTCATAGTCCTAAGAAGTTCAGATCAAGAAATAAAAAGGTTTGTTTTGGGCCAATACAACCGCCAGATTGTGTAGTGG
TGTTAGATACGGAGAGGAAGAGCTCGGTGATTTTGGAGGCTGATAGATTGCAGGTTCCCATTGTGGCTTTGGTTGATTCAAATATGCCATGGGAGATTTA
TAAGAAGATTGCGTATCCAGTGCCTGCTAATGATTCTGTTCAGTTTGTGTACTTGTTTTGCAATATAATTACCAAGACATTTTTGCTTGAGAAAAAGAAA
TTGAAAGCACTAAAAGGACATATTCGTAAAGAAGAGCGAGATCTTTCCACCAAAGAATCGAGCAAGGAAATCCAAGAAAGTGTGCAAAGCAAGAACATGA
GCAATATCAGCTCTCTAATTGGTGAAGTGCTTGTTGTTCCTTATCAGAACTTAGCACCTGCTTCTAATGATATTGCAGAAATTAAGAACCTTTTGGACAA
GATTGTCGTGGTGAAGTTCAATGACACTTTGGGAACAGCTCTAGGGTTTAATGGCCCCAAGTCTTTAATTGGAATTCGTGATGGTTTGACATCTCTTGAC
TTGATTGTTAATCAAATTCAGTCTCTCAATTTGACATACGGATGCCATATCCCTTTGGTGCTTATGAACACTATCAGCACTCATGATGATTCCCTGAAGG
CTTTGGAGAAATATTCCACATCAAATGTTGATATTCTTCCTCTTAGTCAGGGCCAACATCCTCAAAAGAAATCTTCCAGTGGACAGAGCAGTGCAGATGA
ATTGTATCCATCTGATCATGCTGCAGCCTTCCTTTCCCTAATGAAAAGCAGCGGAACTCTGGATGTATTATTATCACAGGGAAAGGAGTACGTACATGTG
GTGAGCTCCGATAATGTAGCTGCTGCTGTTGATCCAAGTACCCTCTTCAGAATCATGAGTCATTTGAGCCAAAACAATATTGAATACTGTATGGAGGTGA
CACCAACCACTTCATATCTTTCAAAAAGTAAAATGGTCAATCAGCGGCAAGGAATGTTTGAGCTTGCAGAAATAGCGCGAACACATCCTAAAGATTCAAC
GGAGAAGTTCAAGTTTATCGACACAAGAAGTTTGTGGGTGAATTTGAAAGCAATCAGAAGGCTTGTAGATACCAATGCCCTGAAGATAGAGAACCTGTCT
GTTTCAAAGGAAATGGAAGGTGATCAAATGGTTTTGCAAGAAACAGCAGCTGGTTCGACAATACAGTTATTTGATAAAGCCATCGGCATTAATGTCCCTC
AATTTCGGGTTGTGCAACTAAATGCAACATCAGACTTGCTTCTTCTTCAGTCAGATTTGTACTCCACCTCTGAAGGCGTTTTAGTTCGGAACACAGCTCA
AGCTAACCCTGCAAATCCATCTATTGAGTTGGGACCTGAATTTGAAAAGGTCAGCGATTTTCAACGCCGTTTCAAATCCATTCCTAGCATAGTTGGATTG
GATAGCTTGAAGGTAGCTGGTGATGTGTGGTTTGGAGCTGGCGTGATTCTTAAGGGGAGAGTAAGTATTGTTGCAAAACCAGGGGTGAAACTGGAAATTC
CTGATGGTGCAGTCCTTGAGAACAAGGATATCAATGACCCGTCAGACATTTGA
AA sequence
>Potri.013G070001.1 pacid=42811515 polypeptide=Potri.013G070001.1.p locus=Potri.013G070001 ID=Potri.013G070001.1.v4.1 annot-version=v4.1
MTLHSIIIQKLLTTNAHIGRRVAAHHLKIYTYGMRNQISIIDSDKTLICLRNAASFISHLARDKNARFMFVNTNLLFDEIVEQMTKKMGIYSPRDNIMWR
MGGFLTNSHSPKKFRSRNKKVCFGPIQPPDCVVVLDTERKSSVILEADRLQVPIVALVDSNMPWEIYKKIAYPVPANDSVQFVYLFCNIITKTFLLEKKK
LKALKGHIRKEERDLSTKESSKEIQESVQSKNMSNISSLIGEVLVVPYQNLAPASNDIAEIKNLLDKIVVVKFNDTLGTALGFNGPKSLIGIRDGLTSLD
LIVNQIQSLNLTYGCHIPLVLMNTISTHDDSLKALEKYSTSNVDILPLSQGQHPQKKSSSGQSSADELYPSDHAAAFLSLMKSSGTLDVLLSQGKEYVHV
VSSDNVAAAVDPSTLFRIMSHLSQNNIEYCMEVTPTTSYLSKSKMVNQRQGMFELAEIARTHPKDSTEKFKFIDTRSLWVNLKAIRRLVDTNALKIENLS
VSKEMEGDQMVLQETAAGSTIQLFDKAIGINVPQFRVVQLNATSDLLLLQSDLYSTSEGVLVRNTAQANPANPSIELGPEFEKVSDFQRRFKSIPSIVGL
DSLKVAGDVWFGAGVILKGRVSIVAKPGVKLEIPDGAVLENKDINDPSDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03250 AtUGP1, UGP1, U... UDP-GLUCOSE PYROPHOSPHORYLASE ... Potri.013G070001
[exp]
0 1
AT3G23940 dehydratase family (.1.2) Potri.003G176600
[exp]
1.41 0.8159
AT1G26460 Tetratricopeptide repeat (TPR)... Potri.010G159100
[exp]
4.24 0.7622
AT4G27640 ARM repeat superfamily protein... Potri.008G085800
[exp]
6.16 0.7687
AT5G57870 eIFiso4G1 eukaryotic translation Initiat... Potri.006G265300
[exp]
13.41 0.7274
AT1G03110 TRM82, AtTRM82 tRNA modification 82, Transduc... Potri.005G211600
[exp]
29.56 0.7152
AT4G11820 FKP1, EMB2778, ... FLAKY POLLEN 1, hydroxymethylg... Potri.003G120400
[exp]
31.17 0.7220
AT5G57870 eIFiso4G1 eukaryotic translation Initiat... Potri.018G017600
[exp]
31.46 0.7467
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.004G169500
[exp]
31.49 0.7165
AT3G18580 Nucleic acid-binding, OB-fold-... Potri.012G058800
[exp]
39.91 0.7059
AT1G71220 UGGT, PSL2, EBS... PRIORITY IN SWEET LIFE 2, EMS-... Potri.003G018900
[exp]
52.44 0.6463

Potri.013G070001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.