Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43030 369 / 7e-130 Ribosomal protein L3 family protein (.1) AT3G17465 136 / 4e-38 RPL3P ribosomal protein L3 plastid (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002300 [exp] 164 / 1e-48 AT3G17465 484 / 8e-174 ribosomal protein L3 plastid (.1) Potri.008G207000 [exp] 162 / 7e-48 AT3G17465 478 / 1e-171 ribosomal protein L3 plastid (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001337 [exp] 414 / 3e-147 AT2G43030 365 / 2e-128 Ribosomal protein L3 family protein (.1) Lus10013640 [exp] 414 / 6e-147 AT2G43030 365 / 6e-128 Ribosomal protein L3 family protein (.1) Lus10017709 [exp] 159 / 5e-47 AT3G17465 450 / 2e-160 ribosomal protein L3 plastid (.1) Lus10033666 [exp] 159 / 6e-47 AT3G17465 455 / 2e-162 ribosomal protein L3 plastid (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [poplar] [flax] EFTPs PF00297 [poplar] [flax] Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence Show only first row Show all	>Potri.013G070100.1 pacid=42812458 polypeptide=Potri.013G070100.1.p locus=Potri.013G070100 ID=Potri.013G070100.1.v4.1 annot-version=v4.1 ATGCCACTCTCTGCTATAAATCAATTTTGCTATCCCACCCCATCGCTTGTCAAGACCAAAACCCCCGCTTCTTTAAAATGCAGTTTCCTCTCAAAAAGCC CACCTTTTCCCCTCACAAAAACAACCCCTTTAACCCTCAACAGAAACCGAAAGTTCAGCCTTTCCATTGTGGCAATGAGCATGGAAGCTGGGGTTGGTGT TATGGGAACTAAACTTGGAATGATGACTTACTTTGAGCCTAATGGGAAAGTGGTTCCAGTTACCGTGGTTGGTTTTAGAGAAGGAAATATCGTGACCCAA ATTAAGACTGATGCTACTGATGGGTATGATGCAGTTCAAGTTGGGTATAGGAGGGTTAGGGATAAAAAGCTGACTAAGCCTGAAATGGGTCATTTGGAGA AGGCTGGAGTTATACCTATGAGGCATTTGCAGGAGTTTAGGCTACAAGGTCTTGATGGGTTTGAGATTGGACAGAAGTTGTTGTTTGAGGAGCTCTTCAA GGAGGGTGATCTTGTTGATGTCTCCGGGACAACCATTGGCAAGGGTTTTCAAGGTGGTATTAAGCGTCACAATTTCAAAAGGGGTCCGATGTCCCATGGT TCCAAGAGTCATAGAGCTTTGGGATCCATTGGTGCCGGAACAACACCAGGTCGTGTATACAAGGGGAAGAAGATGCCTGGCAGGATGGGTGGGACCAAGA CAAAGATCAGAAAGCTCAAGATTGTAAAGATTGATAATGATCTTCGTGTTGTGATGATCAAAGGTGCCCTCCCTGGTAAGCCAGGGAACCTTCTACGAAT TGCACCAGCTAAGATTGTTGGTAAAAACATACCAAAGAGTTAG
AA sequence Show only first row Show all	>Potri.013G070100.1 pacid=42812458 polypeptide=Potri.013G070100.1.p locus=Potri.013G070100 ID=Potri.013G070100.1.v4.1 annot-version=v4.1 MPLSAINQFCYPTPSLVKTKTPASLKCSFLSKSPPFPLTKTTPLTLNRNRKFSLSIVAMSMEAGVGVMGTKLGMMTYFEPNGKVVPVTVVGFREGNIVTQ IKTDATDGYDAVQVGYRRVRDKKLTKPEMGHLEKAGVIPMRHLQEFRLQGLDGFEIGQKLLFEELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHG SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKIDNDLRVVMIKGALPGKPGNLLRIAPAKIVGKNIPKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	0	1
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	1.73	0.9897
AT4G17560			Ribosomal protein L19 family p...		Potri.001G152200 [exp]	3.46	0.9850
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G071300 [exp]	3.74	0.9852
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Potri.005G189600 [exp]	6.78	0.9637
AT2G34860		EDA3	embryo sac development arrest ...		Potri.001G009800 [exp]	6.92	0.9820
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.003G121600 [exp]	6.92	0.9843
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	7.07	0.9821
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	8.48	0.9785	Lil3_3,Pt-LIL3.1
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.008G186601 [exp]	9.48	0.9768
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	10.58	0.9805	Pt-RPL12.6

Compare expression of checked genes

Potri.013G070100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.