Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 780 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT5G42540 752 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G75660 716 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 801 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 774 / 0 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 704 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 438 / 6e-135 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020397 [exp] 947 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 759 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 661 / 0 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 622 / 0 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10013326 [exp] 558 / 0 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 497 / 2e-156 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 422 / 4e-132 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 394 / 5e-119 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 293 / 9e-83 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 243 / 1e-69 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF03159 [poplar] [flax] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Potri.013G070200.1 pacid=42811563 polypeptide=Potri.013G070200.1.p locus=Potri.013G070200 ID=Potri.013G070200.1.v4.1 annot-version=v4.1 ATGGGAATACCAGCATTCTATAGATGGTTAACGGAGAAGTATCCGCTTATAACTGCCGACGTCATGGAAGAAACGCCGCTTTTAATCAACGGCGTTTCTG TCCCACTCGACACTTCCTGCCCTAACCCTAACGGTATCGAGTTCGACAATCTCTATCTTGACATGAATGGAATCATTCACCCTTGTTTCCATCCCGAAGG ACTGCCGCCTCCGACTACATACGAGGAGGTTTTCGCTGCGGTTTTCAAGTACATTGATAGGATCTTCTCCATTGTCAGGCCTCGAAAACTCCTTTTCATG GCTATTGATGGTGTTGCTCCACGAGCTAAGATGAATCAGCAGCGGTCGAGGCGTTTTAGGGCTGCTAGAGATGCTGCTGATCAAGCCTTATCTATAGAGA CGGATGGTGGGATTGTCCCTGAATCAGAAGAAGGGAACTTGGAGCAGGTGAAGAAACTTGACTCGAATGTAATTACACCTGGAACTGAGTTTATGGATTT GTTGTCGTCAGCTCTTCATTATTACATACGCTTGAGGATGAAAGAGGATTTGGGATGGCGAGGAATAAAGGTCATTCTTTCTGATGCTAATGTGGCCGGT GAAGGAGAGCATAAGATAATGTCATACATCCGCTTGCAAAGGAATCTACCGGGTTTTGATCCAAATACACGGCATTGTTTATATGGATTGGATGCGGATT TGATTATGCTCGCGTTGGCTTCTCATGAAATTCATTTCTCGATTCTAAGAGAGGATCTTGGAAATGCAAGCACAGGCGGTAAATCTTCGAAAGAAAAACA TAGACTAATGAAGCGCCGAAAATTAAATGGGGATTCAGATCAAGTAGGAAAGTTTGCTGAGAATATAGAAAACCATATTTCGGGGATGAAGTTTCAGTTT CTCAATGTTTGGATCTTGAGGGAGTATTTAGCATATGATTTGAGAATACCAGACACAACATTGAAAGTAGACCTGGAGCGTGTGATTGATGATTTTGTCT TCATGTGTTTGTTTGTTGGAAATGATTTTCTGCCACACATACCATCACTGGAGATATCCGAGGGGGCTATCGATTTGCTCATGACAGTTTACAAAAAGGA ATTTGCTCAGATGGGTGGTTACCTAACAAATTCTTTTGAGATAAACCTGATTCGTGTGGAGCACTTTGTACAAGCTCTAGGTTCTCATGAAAGCGCAATC TTCAGAAGACGCAACCAGATGCAAAAAGAGAGAGAGATACGTTTCCAACGCATATCAAAACGTCAGCAAGCATTTCATTCATCAAAATCATTGTTTGATG ATGGTGTATCTGAAAGTTCCAAATCTTCTGTGAAGCTGGAAACGGCCCCTCTTGGTCAAAATCGACAAAATCCCCGAAGCGTGGCCATTAAGGAATCAAA TCACTTCTCCTCCAATGGCACAAGTGCTGTAGTTGACAAGATTAAATTGGGAGATGAGGGTTGGAAGGAAAGATACTATGCAGAAAAGTTTGAGGCAAAG AGTGAAGATGAGCGTGATACCATTAGGAGACATGCGGTTTTCAAATATGTAGAAGGGATTTGTTGGGTCATGCGTTACTACTATGAAGGAGTCTGCTCCT GGCAATGGTTCTACCCTTATCATTATGCACCATTTGCCTCGGATTTCTATGGCTGTGATCAGTTAGAAATTCACTTCACACTTGGGGAACCTTTCAAGCC ATTTGATCAATTAATGGCAGTGTTGCCTGCTGCGAGTGCACATGCTCTTCCTTTGTTTTACAGGAAATTGATGATAGATGCATCATCACCAATATTGGAT TTTTACCCTACTGATTTTGAGCTTGATAATAATGGGAAACGTTTTTCCTGGCAGGCTATTTGCAAATTACCATTCATCGAAGAGTCCCGCCTTGTTTCAG AGATCACAAAAGTGGAGCACACATTGACAGATGAGGAGAGACGGAGAAACCGTTTGGGTTATGATGTCCTGTGTGTTCATGTTTCACATCCTTTGGCAGT TAAGGTAATTTCTCTGTTCGAGTGCAAAGATCAGTCAGCTCAGCCAACAGCTAATGGCAAATTGAAAATTGACCCAAAAATCAGTGGTGGAATGAATGGA TACATTTACATTTCTGAGAAACCTGAATGGCCTCTCGGGATATTTTCACCAATTGATGGCATGCTGATGATAGCGAGTGAACAAGTGATATCAGTGTTCT ATGAATACCCTCCATTTCATTCTCATATTCCAAGGCTACCAGAAGGAGTTATCTTGCCTAACAAGTCTGTGACCAAGTGCAATATTTTGCATGCACATCA TTTATGGCATGAGCCAGCTATTCCTTCTATATCTTCTAAAAGACAAATCCCCAAGTCTATCTCAGGCCCTCAACTGGCAGAATTGGCTCATCGACTTGTG TCAGAATATAGTTCTTCAAAGCACCTGGACTTCAACAGATGTGCTGAACGTGGGTTACCTCTGGATGCTGCTAGAATGGGAGAAATGAGAACACAAGTCC AGCCCAAGAAAAGGAAACGAGGTAAACGCAATAAAAACTGCCTTGATGGAAGATCTAAAGAAAGTCAAGTGGGTAAAGGTGATTTTGTCCCTATCAACAA TGTCAAGAATATGGAGAGTTCTACTCCCAGGCAACAGGGGGAAAGCTGTGGTGGTTATGGCAGTGCTGGAGTGGATGAAATTAAAATAGAAAAATCTAAA AAGAGGAAAAGGAGTTCTAAGAACAGAAAACGTAAGGAAGGTGCGGAAGGTGCTGGTATACCCGATGGTGTTCAGAAGCTGGAAATAAGCATTCAAGAGC AGAGAAACAGTGATCATACTTCTGGAGGTGCAGATGGAGAAAATGATTACAAAGAAGAAAAATCTAGGAAAAGAAAATCCAGAAAAAGAAATAAGAAAGG GAATCAGAATGATGGTGATGCTGTCCAAAACAAAAATGCTGAGAAATTGGGTTGCTGTAACCACCACATCAGCGAACTACAAAGTTGCATTCTTCAGGAG CAGAGCGGAGGGGATGTTCATGCAGGTGGAGATGTGGCATTGGAGTTGAAAACAGAGGTGGAATCCAAGAAAAGGAGAAAGATCGAAGCTGATGGCTTCC TAATTAACAATGTTGAAAAATTGGAGAGTTGTTTTCTCATGGGACAAAGAGGACGTGACAGTAACCACACAAATGCTGATGGATTGGACGCAACCAGTAA CCCTGTCCCAAATAACAATCATCAGGAATTGGAGGATGGGGCATTGGAATTGAAAAAGGAGTTGAAATCCAAGAAAAAGAAACGAAGATCTAAGAAAAGG AGAAAGATTGAAGCTGATGGCGTCTTAATTAACAATGTTGAAAAATTGGGGAGTTCTCCCATGGAACAAAGAGGAGGTGACAGTAAACTCACAAATGCTG ATGGATTGGACCCAACCAGATGCCCTGTCTCTAATAAAATCAATCAGGAATTGGAGGGTTCTGGTCTTCAGGAACAGATAGAACAATTTGACCATTCAGG TGCAAATGAGGTGGACATAAAACCAGAAGTCAAATCCAAAAGGAAGAAACGGAGGTCTAAGAAAAAGCGGCAGATAGAGCTTATTGTCCCACCTAATGAT CCTCCAGACTCGCAGTCTGGTCTTCCTGGAAAACAGGGAACTTTTGACAGCAACCATATAGGTGTGGGTGGGTTGGAAATGAAAACAGAAGTCTAA
AA sequence Show only first row Show all	>Potri.013G070200.1 pacid=42811563 polypeptide=Potri.013G070200.1.p locus=Potri.013G070200 ID=Potri.013G070200.1.v4.1 annot-version=v4.1 MGIPAFYRWLTEKYPLITADVMEETPLLINGVSVPLDTSCPNPNGIEFDNLYLDMNGIIHPCFHPEGLPPPTTYEEVFAAVFKYIDRIFSIVRPRKLLFM AIDGVAPRAKMNQQRSRRFRAARDAADQALSIETDGGIVPESEEGNLEQVKKLDSNVITPGTEFMDLLSSALHYYIRLRMKEDLGWRGIKVILSDANVAG EGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALASHEIHFSILREDLGNASTGGKSSKEKHRLMKRRKLNGDSDQVGKFAENIENHISGMKFQF LNVWILREYLAYDLRIPDTTLKVDLERVIDDFVFMCLFVGNDFLPHIPSLEISEGAIDLLMTVYKKEFAQMGGYLTNSFEINLIRVEHFVQALGSHESAI FRRRNQMQKEREIRFQRISKRQQAFHSSKSLFDDGVSESSKSSVKLETAPLGQNRQNPRSVAIKESNHFSSNGTSAVVDKIKLGDEGWKERYYAEKFEAK SEDERDTIRRHAVFKYVEGICWVMRYYYEGVCSWQWFYPYHYAPFASDFYGCDQLEIHFTLGEPFKPFDQLMAVLPAASAHALPLFYRKLMIDASSPILD FYPTDFELDNNGKRFSWQAICKLPFIEESRLVSEITKVEHTLTDEERRRNRLGYDVLCVHVSHPLAVKVISLFECKDQSAQPTANGKLKIDPKISGGMNG YIYISEKPEWPLGIFSPIDGMLMIASEQVISVFYEYPPFHSHIPRLPEGVILPNKSVTKCNILHAHHLWHEPAIPSISSKRQIPKSISGPQLAELAHRLV SEYSSSKHLDFNRCAERGLPLDAARMGEMRTQVQPKKRKRGKRNKNCLDGRSKESQVGKGDFVPINNVKNMESSTPRQQGESCGGYGSAGVDEIKIEKSK KRKRSSKNRKRKEGAEGAGIPDGVQKLEISIQEQRNSDHTSGGADGENDYKEEKSRKRKSRKRNKKGNQNDGDAVQNKNAEKLGCCNHHISELQSCILQE QSGGDVHAGGDVALELKTEVESKKRRKIEADGFLINNVEKLESCFLMGQRGRDSNHTNADGLDATSNPVPNNNHQELEDGALELKKELKSKKKKRRSKKR RKIEADGVLINNVEKLGSSPMEQRGGDSKLTNADGLDPTRCPVSNKINQELEGSGLQEQIEQFDHSGANEVDIKPEVKSKRKKRRSKKKRQIELIVPPND PPDSQSGLPGKQGTFDSNHIGVGGLEMKTEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G070200 [exp]	0	1
AT5G50310			Galactose oxidase/kelch repeat...		Potri.015G090100 [exp]	1.00	0.8425
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.005G201400 [exp]	5.29	0.8077
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	7.74	0.8214
AT5G19485			transferases;nucleotidyltransf...		Potri.001G271800 [exp]	10.77	0.7267
AT2G06040			unknown protein		Potri.006G142200 [exp]	16.24	0.7613
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	17.34	0.7890
AT5G53800			unknown protein		Potri.011G121000 [exp]	18.24	0.7885
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	18.65	0.8212
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.014G086700 [exp]	19.74	0.7380
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.004G084800 [exp]	20.00	0.7084	Pt-MAP2.2

Compare expression of checked genes

Potri.013G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.