Plant FIBer expression Database

Potri.013G070400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17690 259 / 4e-82 AtLHP1, LHP1, TFL2 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G044400
[exp]
637 / 0 AT5G17690 268 / 2e-84 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013641
[exp]
287 / 3e-93 AT5G17690 253 / 6e-80 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Lus10005669
[exp]
273 / 5e-88 AT5G17690 237 / 5e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Lus10001338
[exp]
268 / 5e-85 AT5G17690 240 / 3e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Lus10020324
[exp]
253 / 5e-80 AT5G17690 223 / 3e-68 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence
>Potri.013G070400.2 pacid=42811718 polypeptide=Potri.013G070400.2.p locus=Potri.013G070400 ID=Potri.013G070400.2.v4.1 annot-version=v4.1
ATGAAGGGAAAGAGGAAGGCAACAGCAAATCCAGTGTTGGCTGATACTGCAGAGGGCAGTAGTAACAGTTTAATTGAGACCCAAGTGAGGGAAGGGAATA
TTGGTGAAGAAAAGGAGATAAACTGGGTTGATAATGGGGAGAATCGAGAGGAAACTGAAGGAGAAGAAGAAGAGGAAGAGGATAATGATGATGAAGAGGA
AGAGGAAGAGGACCCCAAAGGAAAAGATGAGAAAGGCAATTTATTTGATGAAGAAAGGACTAAACTTGATGAGGGTTTCTTCGAAATCGAGGCTATTCGT
CGAAAACGAGTACGAAAGGGTCAGTTGCAGTATCTTATTAAATGGCGAGGATGGCCTGAAACAGCAAACACCTGGGAGCCCTTGGAGAATTTGCAGTCGT
GTTCTGACGTCATTGATGCATTTGAAGAGAGCTTGCGGTCAGGTAGGTCTTCACGAAAGCGGAAACGCAAGCATGGGGCTCCGCATACTCCCTCCAAGAA
GAAGCAGCCACGTTCCTCTGCTGTCTACAATGTAATGGATGTTGAAGTAAGTATTGCGGATAAACATCTCCCTTCTGCTCCTCTCAATAACTCATTGCTT
GCCGATCTACCTTCACCCTCTCAATTTATCGGCTTAGGTCATGGAGGAGAGAGTAGTGGAGATGTAAATAACATCAAAACATCAAAGCAAACTGATGAGA
ATGGGTCCATAAACGGTTCAAAGCATATTTTTGAAAGGAAAGAGGATAATGAATATGATCCAAAGCTTAGCGAGCTTATTGGAACAATTCCTAACATTGA
TGTAAACACAAATAAGTTCACAATACATTTCCAAGAAGAAAAGGCTTCAGAAGATAATGGGATTGCAAATGGGCTTCCCAAGGTTGATTATGTGGACCTT
GTTCAGAACAGTCGATGCACAGGTGCTAAGAAAAGAAAGTCTGGTTCTGTGAAGAGGTTCAAAAAAGACTCTGTCATGTGCGAACCAGTTTTCTTACCGA
ATTCATCTGGAAATTTCTCAGTTGGCTCTACCGGTGCAGCTGCACAACCAGGGATTGAAAATCCTAGTTTAACTTGGGGTAATTCAAGTCACATGCCAAT
GACTGGAAATTCCATAAATGCATTTGCTATCACCAAGATCCTCAAGCCTATAGGCTTTTCAGCCTCTGTGTTTGACAATGTCCAGGATGTGCTGATAACC
TTTCGTGCATTAAGGTCTGATGGACAAGAAGTAACAGTGGATAACAAGTTTCTCAAGGCTAATAATCCACATCTGTTAATCAACTTTTATGAGCAACATC
TCAAATACAGTACATGA
AA sequence
>Potri.013G070400.2 pacid=42811718 polypeptide=Potri.013G070400.2.p locus=Potri.013G070400 ID=Potri.013G070400.2.v4.1 annot-version=v4.1
MKGKRKATANPVLADTAEGSSNSLIETQVREGNIGEEKEINWVDNGENREETEGEEEEEEDNDDEEEEEEDPKGKDEKGNLFDEERTKLDEGFFEIEAIR
RKRVRKGQLQYLIKWRGWPETANTWEPLENLQSCSDVIDAFEESLRSGRSSRKRKRKHGAPHTPSKKKQPRSSAVYNVMDVEVSIADKHLPSAPLNNSLL
ADLPSPSQFIGLGHGGESSGDVNNIKTSKQTDENGSINGSKHIFERKEDNEYDPKLSELIGTIPNIDVNTNKFTIHFQEEKASEDNGIANGLPKVDYVDL
VQNSRCTGAKKRKSGSVKRFKKDSVMCEPVFLPNSSGNFSVGSTGAAAQPGIENPSLTWGNSSHMPMTGNSINAFAITKILKPIGFSASVFDNVQDVLIT
FRALRSDGQEVTVDNKFLKANNPHLLINFYEQHLKYST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17690 AtLHP1, LHP1, T... TERMINAL FLOWER 2, LIKE HETERO... Potri.013G070400
[exp]
0 1
AT2G26850 F-box family protein (.1) Potri.006G040000
[exp]
5.29 0.7552
Potri.015G078351
[exp]
8.12 0.7259
AT2G21180 unknown protein Potri.004G167700
[exp]
8.77 0.7522
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.001G179800
[exp]
10.39 0.7571
AT2G16940 Splicing factor, CC1-like (.1.... Potri.009G137200
[exp]
12.60 0.8156
AT4G25670 unknown protein Potri.004G079900
[exp]
14.14 0.7296
AT5G56140 RNA-binding KH domain-containi... Potri.011G168000
[exp]
18.46 0.7117
Potri.018G110450
[exp]
40.59 0.7549
AT1G72510 Protein of unknown function (D... Potri.003G067800
[exp]
48.37 0.6353
AT3G11590 unknown protein Potri.009G160900
[exp]
48.85 0.6820

Potri.013G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.