Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17660 344 / 5e-119 tRNA (guanine-N-7) methyltransferase (.1) AT5G24840 44 / 4e-05 tRNA (guanine-N-7) methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091800 [exp] 137 / 3e-36 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015923 [exp] 376 / 4e-132 AT5G17660 366 / 5e-128 tRNA (guanine-N-7) methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.013G070800.3 pacid=42812024 polypeptide=Potri.013G070800.3.p locus=Potri.013G070800 ID=Potri.013G070800.3.v4.1 annot-version=v4.1 ATGGCGGCTTCACTTGGTTTGCACTGCCACCACTACCATGTTGCAGCAGCAGCAGCTAATCCACTACGCAAAGCCGCAAAGCAAGCTCTATCTTCTCTAA TACTGAAATCTTCAAAGCCTCATCATCACCATAGTTGTTGCTATAATAGTGATAGTGTTGGTGCCAAAGAAATTAGAAGCCCTGACTTGGTTGCTTTGGA GTATGCTGACCTTAATCTTTTTGATAAAATTTCTGGGGAATTGGGTCATGTAAGAATCAGGCAACATGTAAATCCTTTGAGTTCCTCTTTCTCTGTGCCT GCACAAGTGCCTGATTGGAAGGAAGTTTTCAGGGACCCTACATTGCCACTCATGGTTGATATTGGAAGTGGGAGTGGCAGATTTCTCATTTGGCTTGCGA AAAGAAATCCTGATTCAGGAAACTACTTGGGACTTGAAATAAGGCAGAAACTGGTCAAGCGTGCGGAATTTTGGGTAAAAGAGCTCGCTCTTACTAACAT GCATTTCCTATTTGCAAATGCTACAATCTCTTTCAGACAACTGGTTCTCTCATATCCTGGACCCTTGATGCTAGTCTCAATTTTGTGTCCAGACCCTCAT TTCAAGAAAAGGCACCATAAAAGAAGGGTTGTGCAGAAAACATTAGTAGATAACATCATCAGTCATTTAGTTCCTGGAGGGAAGGTTTTCTTGCAGTCTG ACGTGCTTGATGTGGCTCTGCACATGAGAAGCCAATTTGATGCGGAGTCGGATGCGCTTCAGCACGTCGATGAACTTGACCCGAGTGTACTCTGTGACAG TGATGGATGGCTACTGGATAATCCAATAGGAATAAGGAGTGAAAGAGAAATCCATGCTGAATTTGAAGGAGCGAAAATTTACAGAAGGTTGTACCAGAAG AGGACATAA
AA sequence Show only first row Show all	>Potri.013G070800.3 pacid=42812024 polypeptide=Potri.013G070800.3.p locus=Potri.013G070800 ID=Potri.013G070800.3.v4.1 annot-version=v4.1 MAASLGLHCHHYHVAAAAANPLRKAAKQALSSLILKSSKPHHHHSCCYNSDSVGAKEIRSPDLVALEYADLNLFDKISGELGHVRIRQHVNPLSSSFSVP AQVPDWKEVFRDPTLPLMVDIGSGSGRFLIWLAKRNPDSGNYLGLEIRQKLVKRAEFWVKELALTNMHFLFANATISFRQLVLSYPGPLMLVSILCPDPH FKKRHHKRRVVQKTLVDNIISHLVPGGKVFLQSDVLDVALHMRSQFDAESDALQHVDELDPSVLCDSDGWLLDNPIGIRSEREIHAEFEGAKIYRRLYQK RT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17660			tRNA (guanine-N-7) methyltrans...		Potri.013G070800 [exp]	0	1
AT5G08540			unknown protein		Potri.010G254800 [exp]	1.00	0.9786
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	2.82	0.9661
AT1G10522			unknown protein		Potri.010G094900 [exp]	4.58	0.9596
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Potri.006G260200 [exp]	5.56	0.9360	Pt-AAT2.1
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	8.24	0.9582
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	8.48	0.9413
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	8.66	0.9560
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.008G058800 [exp]	9.16	0.9504
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Potri.001G028500 [exp]	9.16	0.9509
AT4G01650			Polyketide cyclase / dehydrase...		Potri.014G110600 [exp]	9.94	0.9508

Compare expression of checked genes

Potri.013G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.