Plant FIBer expression Database

Potri.013G070900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G070900.1 pacid=42812740 polypeptide=Potri.013G070900.1.p locus=Potri.013G070900 ID=Potri.013G070900.1.v4.1 annot-version=v4.1
ATGGGAGGTGGCAAGGACAAGTCTGACAAAGAGTCTACAGACAAGGGACTGTTTTCAAATCTTGCTGGCTATGCTGGTGGACATTACCCTCCAAGCGCAC
CATACCCTCCACATGGTTATCCACAACAGGGATACCCACCAGCAGGTTACCCCCCCCCTGGCGGCTACCCACCTTCGGGCTACCCTCCCCCAGGAGGATA
CCCACCAGCAGGTTACCCTCCTCCTGGCGGTTACCCTCCCCCTGGCGGTTACCCACCCCCTGGCGGCTACCCTCCTCCTGGTGCTTACCCTCCAGCTGGT
TACCCTGGCCCATCTGCTTCACATTATTCAGCAACTATAACAGGGCATGGACCTGGAATGGGGACAATGTTAGCTGGAGGTGCTGCTGCTGCTGCAGTTG
CTTACGGGGCCCACCAGATGTCCCATGGAGGTTCCCATGGCTATGGTCACGGAGGTTACCATGGCTATGGTCATGGAAAGTTTAAGCATGGCTATGGTCA
TGGAAAGTTTAAGCATGGCAAGTTTGGCAAGCGCTGGAAGCATGGCGGATTTGGAAAGCACAAGGGCAAATTCTTCAAGAGATGGAAGTGA
AA sequence
>Potri.013G070900.1 pacid=42812740 polypeptide=Potri.013G070900.1.p locus=Potri.013G070900 ID=Potri.013G070900.1.v4.1 annot-version=v4.1
MGGGKDKSDKESTDKGLFSNLAGYAGGHYPPSAPYPPHGYPQQGYPPAGYPPPGGYPPSGYPPPGGYPPAGYPPPGGYPPPGGYPPPGGYPPPGAYPPAG
YPGPSASHYSATITGHGPGMGTMLAGGAAAAAVAYGAHQMSHGGSHGYGHGGYHGYGHGKFKHGYGHGKFKHGKFGKRWKHGGFGKHKGKFFKRWK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G070900
[exp]
0 1
AT3G01050 MUB1 membrane-anchored ubiquitin-fo... Potri.004G124600
[exp]
6.92 0.7864
AT5G15640 Mitochondrial substrate carrie... Potri.017G098500
[exp]
13.85 0.7259
AT3G54680 proteophosphoglycan-related (.... Potri.013G072200
[exp]
14.00 0.7773
AT2G36780 UDP-Glycosyltransferase superf... Potri.003G100500
[exp]
14.96 0.7708
AT3G53120 VPS37-1 Modifier of rudimentary (Mod(r... Potri.016G097000
[exp]
28.61 0.7259
AT3G02150 TCP TFPD, PTF1, TCP... TEOSINTE BRANCHED1, CYCLOIDEA ... Potri.004G116100
[exp]
28.72 0.7740
AT5G25220 HD KNAT3 KNOTTED1-like homeobox gene 3 ... Potri.018G022700
[exp]
35.31 0.6946 Pt-KNAT3.3
AT3G14390 Pyridoxal-dependent decarboxyl... Potri.005G246300
[exp]
44.89 0.7131
AT2G40270 Protein kinase family protein ... Potri.008G072100
[exp]
46.95 0.6834
AT2G35360 ubiquitin family protein (.1) Potri.003G089400
[exp]
54.47 0.7240

Potri.013G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.