Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17640 639 / 0 Protein of unknown function (DUF1005) (.1) AT1G10020 305 / 8e-100 Protein of unknown function (DUF1005) (.1) AT4G29310 300 / 3e-98 Protein of unknown function (DUF1005) (.1) AT3G19680 246 / 2e-76 Protein of unknown function (DUF1005) (.1) AT1G50040 235 / 2e-72 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112600 [exp] 316 / 3e-104 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.005G150100 [exp] 314 / 3e-103 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.009G084000 [exp] 260 / 2e-82 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 259 / 7e-82 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034991 [exp] 301 / 3e-98 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10032807 [exp] 279 / 2e-89 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012933 [exp] 247 / 1e-78 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1) Lus10012451 [exp] 210 / 9e-63 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10020509 [exp] 194 / 2e-56 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [poplar] [flax] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Potri.013G071000.2 pacid=42811427 polypeptide=Potri.013G071000.2.p locus=Potri.013G071000 ID=Potri.013G071000.2.v4.1 annot-version=v4.1 ATGGATCCTCAGGCTTTCATCAGGTTGTCAATAGGCTCCCTTGGGCTGAGAATTTCTGGAACAACTTTAAATTCTGCACAATCTGGACTCCAGGCATTCT CTTCTCCGTGTTCATGTGAGATACGACTTCGAGGTTTCCCTGTGCAAACAATAGCGGTCCCTTTGTTATCCTCACCTGAAGTGGCACCTGAAATTCACAG CATTGCCTCAATTTTTTATCTTGAAGAATCGGATCTGAAAGCATTACTGACACCTGGCTGTTTTTATGCTAATCAGGCATGTCTTGAGATTGCTGTTTTC ACAGGGAGAAAGGGATCGCATTGTGGTGTTGGCATCAAAAGGCAGCAGATAGGAACATTTAAGCTGGAAGTAGGCCCTGAATGGGGTGAGGGGAAACCGG TGATTCTTTTTAGTGGCTGGATAGGTATTGGCAAAAACAAGAAGGAGAGTGGAAAACCTAGAGCTGAACTTCATTTGAGAGTGAAACTGGATCCTGATCC AAGATATGTGTTCCAGTTTGAAGATGTGACCACGTCGAGTCCTCAGATTGTTCAGCTGCAGGGCTCAATCAAGCAGCCCATATTCAGTTGCAAATTTAGT CGAGACAGGGTAACCCAGGTAGATCCCTTGAGTACCTATTGGTCAACTTCCGATGATGGTGCTGATGTTGAAACAGAAAGAAAAGAACGGAAGGGGTGGA AGGTGAAGATACATGATCTTTCTGGCTCGGCTGTTGCGGCAACCTTCATAACAACTCCCTTTGTGCCAGCAACAGGTTGTGATTGGGTTGCTAGGTCCAA CCCAGGAGCTTGGTTGATTGTTCGTCCAGATGCTTGCAGGCCTGACAGCTGGCAGCCATGGGGAAAGCTTGAGGCATGGCGTGAACGTGGCATCAGAGAC TCCATTTGCTGCAGATTTCACCTCCTGTCTGAAGGCCAGGAAGGTGGTGAGGTTCTCATGTCTGAGATCCTCATCAGTGCTGAAAAGGGTGGGGAATTTT TCATAGACACTGACAGGCAGTTGCGAACTGCAGCAGCTCCAATACCAAGCCCACAAAGTAGTGGAGATTTTTCAGGACTTAGTCCCATTGTTGGTTTTAT TATGAGCTGTCGAGTGCAGGGGGAAGGGAAGCACAACAAGCCATTGGTTCAGTTGGCCATGCGACATGTAACATGTGTGGAGGATGCTGCAATCTTTATG GCACTTGCAGCTGCAGTTGATCTTAGCATTGTAGCTTGCAGGCCTTTCCGTAGAAAGCTCAGAAAAGGGTCTCGCCATTCTTTATGA
AA sequence Show only first row Show all	>Potri.013G071000.2 pacid=42811427 polypeptide=Potri.013G071000.2.p locus=Potri.013G071000 ID=Potri.013G071000.2.v4.1 annot-version=v4.1 MDPQAFIRLSIGSLGLRISGTTLNSAQSGLQAFSSPCSCEIRLRGFPVQTIAVPLLSSPEVAPEIHSIASIFYLEESDLKALLTPGCFYANQACLEIAVF TGRKGSHCGVGIKRQQIGTFKLEVGPEWGEGKPVILFSGWIGIGKNKKESGKPRAELHLRVKLDPDPRYVFQFEDVTTSSPQIVQLQGSIKQPIFSCKFS RDRVTQVDPLSTYWSTSDDGADVETERKERKGWKVKIHDLSGSAVAATFITTPFVPATGCDWVARSNPGAWLIVRPDACRPDSWQPWGKLEAWRERGIRD SICCRFHLLSEGQEGGEVLMSEILISAEKGGEFFIDTDRQLRTAAAPIPSPQSSGDFSGLSPIVGFIMSCRVQGEGKHNKPLVQLAMRHVTCVEDAAIFM ALAAAVDLSIVACRPFRRKLRKGSRHSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G120532 [exp]	1.00	0.8302
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.012G075932 [exp]	2.44	0.7805
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	4.47	0.7667
					Potri.001G168400 [exp]	5.29	0.7774
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	9.38	0.7176
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.005G099200 [exp]	10.39	0.7126
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.002G071100 [exp]	13.41	0.7243
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.001G166800 [exp]	13.41	0.6933
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	16.88	0.7060
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	20.39	0.7339

Compare expression of checked genes

Potri.013G071000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.