Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28780 127 / 2e-31 PIF1 helicase (.1) AT3G51690 118 / 2e-28 PIF1 helicase (.1) AT3G51700 114 / 5e-27 PIF1 helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185950 [exp] 1513 / 0 AT5G28780 213 / 3e-61 PIF1 helicase (.1) Potri.011G042150 [exp] 1285 / 0 AT5G28780 174 / 1e-47 PIF1 helicase (.1) Potri.009G002650 [exp] 1215 / 0 AT5G28780 154 / 1e-40 PIF1 helicase (.1) Potri.012G032376 [exp] 1213 / 0 ND / Potri.001G165240 [exp] 1145 / 0 AT5G28780 171 / 1e-46 PIF1 helicase (.1) Potri.008G203701 [exp] 414 / 3e-132 AT5G28780 70 / 5e-13 PIF1 helicase (.1) Potri.007G048501 [exp] 338 / 2e-104 AT5G28780 123 / 3e-31 PIF1 helicase (.1) Potri.009G007400 [exp] 261 / 2e-78 AT5G28780 208 / 2e-65 PIF1 helicase (.1) Potri.006G157501 [exp] 266 / 1e-76 AT5G28780 196 / 2e-57 PIF1 helicase (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05970 [poplar] [flax] PIF1 PIF1-like helicase CL0023 [poplar] [flax] PF14214 [poplar] [flax] Helitron_like_N Helitron helicase-like domain at N-terminus
Representative CDS sequence Show only first row Show all	>Potri.013G071501.1 pacid=42812444 polypeptide=Potri.013G071501.1.p locus=Potri.013G071501 ID=Potri.013G071501.1.v4.1 annot-version=v4.1 ATGTCATTAAGATTTTCTCTATCCCTGTGTTTTCCTTCACTTAACCATGATCCTGTGCTAATCATGAGCAACAGCATGACAAGTCCTCACGGACATGTTC AGCCGGATGAGTATGTGCCATCTTCTCGATACTCAGAATTTGCTTTCAATGACTATGAAACTCCTGTTGATAGAATCTTGCTATCCGATAACCCAAGCTC TTCAAATACAACATCTGCTCCACAACATACTCAAGGAGTTGGGACTTTGTGTAGGCATTGCGACACTTTTTTTTGGTTCCAAGAACGCTTGGCGCGTTCA ACCAAAACAAACTCATGCTTTACACTTTGTTGTAATAACGGGAAAGTGGTCCTTCCTGCTCCACAAGAAACACCCAACTACCTTGACAACCTCCTCAACC CAACCAGTGGTTCATCATCCAAAAAGTTTCGGCGTGAAATTCATGCTTATAACTCAATGTTCGCTTTCACGTCCATGGGGGCTGCAATTGATCATTCTGT TAATGCTCAACCTGGATCTTATGTCTTTAAGGTCAATGGATATTGCCACCATCTTATGGGTTCTCTTCTTCCCATGGATAATAGAGTTCGTTTGTTCCGT CATGCTAGACAAAGGTTTGGTGATGCCGAGGTTCCAAAGTTCAAGCTTCGATTAATTGGTAAAAGAGATAATGACTCAAGGCAATACGATGATCCTTCTT TAAACGACATTGGTGGTTTGGTTGTTGGGGACATTGGTCATTCTCGATCTGATCGAGACATAATTATTGAAAGTTCATCTGGAACACTGCAAAGAATCTC AAAGCTTCATCCAAAATTTATGGCCCTTCATTATCCACTTCTTTTTCCATATGGTGAGGATGGCTTTCACACTGATATTATGTTAGCTCATCAAGAGCAA CAGCACCCAAAAAAAGACAAAAGAGAAAAGCAAGAAAGCACTCTCATAAAAGGCGGACGATTATACCAACAATTTTTGGTCGATGCATTCGTTAATGTTG AAGAGGATCGTTTGGATTTTATACGTGCAAACAAAGAAAATCTTAGAAGTGAACATTACAAAGGAATACATGATGCTATTGCTAGAGGTGATGTTAATGG ATCAACTACAGGGAAAATTATACTCCCATCCTCTTTAACTGGAAGCCCTCGGTATATGATTAATAATTACCAAGATGCTATGGCCATATGTAGGTGTTAT GGAAATCCTGATCTTTTTATCACATTCACCTGCAATGTTAAGTGGCTTGAAATTCATCGAGAAATTAAAAAGACAAGAAACTATCAGCCTGAGGACAAGC CTGACATCATCGTAAGGGTATTTCATTCAAAGCTAATTGATATGATGTCATTTATCAAATCCGGAAAGCCTTTTGGACGAACAATTACTGTTCCAAAAAG AGGCTTGCCATACACTCATTTATTAGTCTGGCTAGCTCCAGAATTCAAATTTCGTTCACCTAAGGATGTTGACTCTGTTATTTCAGCTGAGATACCTGAG AAGAATCAAGATCCTGTTTGCTATGAAATAGTTTCAAAATTTATGATGCATGGTCCATGCGGCGCTGCAAATCCAAAGGCTCAATGTATGGAAAAGAATA AATCCTATGGTGCACACATTAATGTTGAAATTTGTTGTCAATCCATGCTTATCAAGTATCTTTTTAAGTATGTTAGCAAAGAAGCTGATCGATGCAGAAT GGTTATGAAAAAAGAGACTAATGATGAAATACAAGCTTATCTAAACTGTAGATTCATTTGTCCATATGAGGCAGTATGGCGGCTATTCCAATTCCCAATC CATTCAAGGAGCCCAGCTGTTGAAAGACTCCAAGTCCATCTACCATTACAGCACCATGTGTTTTTTTCAAGTAATGAATCCCTACCATCAGTTCTTAGAA GGCCTGAGATTAATAAGACAATGCTCACAGAGTGGTTTGAGCGCAACAGAGTTGATTTTCCAAGCAAGTACGTTTGGGATGCTAGGCAGAAAGAATGGAT TATTAGATCACGTGGATTTTGCTTTAGTCGCATTGTGTATGTCCATCTTGCTGCTAAGGAGTTGTATTTTCTCAGGATGTTACTTAACCATGTTAAAGGA GCAAAAAGCTTTGAAGACTTGCGGCAAATCTCTGGTATAGTGTTTGCAACTTTTCAACTTGCATGCAAGGCTTTGGGGCTATTAGGAGATGATAAAGAAT GGTCAGACGTGTTTGGTGAAGCTATTCCAACAACTTCCTCTCCGCAACTAAGGCAACTTTTTGTTAATATTATTATGTTTTGCGAGGTTGCTGATCCGAA TAGTCTTTTCGATCAATTTTGGCATTTTATGCATGATGACATTGAATACCGCCTAAGATCTTCTTTTTCAATGTTGAACCTTCATCATAAACTTCCAATG CCAAATGGTCGATTGATGGACGAGGTCAGGAACAAACTTTTAAGGGAAGAACTTGACTATGATCTTGCTGAGCTTAGAAATAACCATTCATTGGCTATCC CACATCTTAACCCATGTCAAAAAAACATCTATGACTCTGTTATTACATCTATACTACAAAACAAACAAGCGCTCATATTTGTTCATGGTCATGGTGGGAC AAGAAAGACTTTTTTGTGGCATACAATTATTAATCGGGTTAGATCTGAAGGTTTAATTTTGCCTGTTGTTGCCTCATCTGGAATAGCTTCTCTTCTGTTA CTTAGAGGACGAACATCCCATTCTAGATTTAAAATTCCATTAGAAGTTAATGAGAATTCAACGTGCGAGATCAAACACAACACTCACCTTTCACGACTAC TGGAGATGACATCACTCATTGTTTGGGATGAGGCTCCAATGAATAATAGATTCTATTTTGAAGCGTTAGACAGGTCTCTACAGGATATTCTTAAAACATT AGATGGGAGACGACTCAACAATCCATTCGGTGGTAAGTCCATCTTATTAGGTGGGGATTTTCGACAAATTCTTCCTGAAGAACTTAGACAGTTTGCAGAG TGGATACTTTTAATTAGTGATGGACAACTATGTGATTTGGCTATTCCGGATGATCATGATGCAGCATTTATCAAAATCCCATGTGAACTTCAGGGATTGG CTCATCTTGACCCGTTCTATTTTAAAGAGAGGGCAATTGTTACACTAAAGAACCTAACTGTTTCTGAGATTAATAATTTTATCCTTGATATTATACCTGG TCATAAATACAGCTTTCTTAGTTGTGATTCTATCCAAACAACTTCTGGCGACATTGACAACATAGATTTATTGTATCCAATTGAATTTATCAACCAGCTT GACTTTAATGGTGTGCCTCAGCACAATATTTCTTTGAAAATTGGCACACCAATTATGTTACTTCGGAACCTTAGTCCCTCTGCTGGTTTATGTAATGGGA CAAGGCTTATTGTTACACAGCTTGCCGAGCGAATTATTGAAGCCCAAATTATTACTGGACAATCACTTAAGATTGTTGGTGTCTTCTTGAAAGAACAAGT TTTCAGTCATGGTCAATTATACGTTGCTTTATCAAGAGTTACATCAAAGAATGGGCTTAAAATCATTTCCTTCGATCATGAAGGAAAACCATCATGTTAT GCCAAAAGCATTGGTTACAAAGATATCATTCAATTATTACCAAAAGGGTAG
AA sequence Show only first row Show all	>Potri.013G071501.1 pacid=42812444 polypeptide=Potri.013G071501.1.p locus=Potri.013G071501 ID=Potri.013G071501.1.v4.1 annot-version=v4.1 MSLRFSLSLCFPSLNHDPVLIMSNSMTSPHGHVQPDEYVPSSRYSEFAFNDYETPVDRILLSDNPSSSNTTSAPQHTQGVGTLCRHCDTFFWFQERLARS TKTNSCFTLCCNNGKVVLPAPQETPNYLDNLLNPTSGSSSKKFRREIHAYNSMFAFTSMGAAIDHSVNAQPGSYVFKVNGYCHHLMGSLLPMDNRVRLFR HARQRFGDAEVPKFKLRLIGKRDNDSRQYDDPSLNDIGGLVVGDIGHSRSDRDIIIESSSGTLQRISKLHPKFMALHYPLLFPYGEDGFHTDIMLAHQEQ QHPKKDKREKQESTLIKGGRLYQQFLVDAFVNVEEDRLDFIRANKENLRSEHYKGIHDAIARGDVNGSTTGKIILPSSLTGSPRYMINNYQDAMAICRCY GNPDLFITFTCNVKWLEIHREIKKTRNYQPEDKPDIIVRVFHSKLIDMMSFIKSGKPFGRTITVPKRGLPYTHLLVWLAPEFKFRSPKDVDSVISAEIPE KNQDPVCYEIVSKFMMHGPCGAANPKAQCMEKNKSYGAHINVEICCQSMLIKYLFKYVSKEADRCRMVMKKETNDEIQAYLNCRFICPYEAVWRLFQFPI HSRSPAVERLQVHLPLQHHVFFSSNESLPSVLRRPEINKTMLTEWFERNRVDFPSKYVWDARQKEWIIRSRGFCFSRIVYVHLAAKELYFLRMLLNHVKG AKSFEDLRQISGIVFATFQLACKALGLLGDDKEWSDVFGEAIPTTSSPQLRQLFVNIIMFCEVADPNSLFDQFWHFMHDDIEYRLRSSFSMLNLHHKLPM PNGRLMDEVRNKLLREELDYDLAELRNNHSLAIPHLNPCQKNIYDSVITSILQNKQALIFVHGHGGTRKTFLWHTIINRVRSEGLILPVVASSGIASLLL LRGRTSHSRFKIPLEVNENSTCEIKHNTHLSRLLEMTSLIVWDEAPMNNRFYFEALDRSLQDILKTLDGRRLNNPFGGKSILLGGDFRQILPEELRQFAE WILLISDGQLCDLAIPDDHDAAFIKIPCELQGLAHLDPFYFKERAIVTLKNLTVSEINNFILDIIPGHKYSFLSCDSIQTTSGDIDNIDLLYPIEFINQL DFNGVPQHNISLKIGTPIMLLRNLSPSAGLCNGTRLIVTQLAERIIEAQIITGQSLKIVGVFLKEQVFSHGQLYVALSRVTSKNGLKIISFDHEGKPSCY AKSIGYKDIIQLLPKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28780			PIF1 helicase (.1)		Potri.013G071501 [exp]	0	1
AT3G54510			Early-responsive to dehydratio...		Potri.003G200900 [exp]	1.00	0.9658
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G055600 [exp]	3.87	0.9106
AT5G34885			Protein of unknown function (D...		Potri.004G109232 [exp]	14.38	0.8467
					Potri.010G007402 [exp]	30.19	0.9082
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120400 [exp]	45.59	0.8155	ATRPABC16.1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	48.68	0.8984
					Potri.006G102050 [exp]	51.05	0.8984
AT5G15110			Pectate lyase family protein (...		Potri.017G078400 [exp]	67.10	0.8984
AT5G18990			Pectin lyase-like superfamily ...		Potri.004G033700 [exp]	94.89	0.8984
AT5G28780			PIF1 helicase (.1)		Potri.006G157501 [exp]	109.94	0.8984

Compare expression of checked genes

Potri.013G071501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.