Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024540 [exp] 2083 / 0 AT5G09470 91 / 3e-19 dicarboxylate carrier 3 (.1) Lus10024538 [exp] 152 / 5e-42 ND / Lus10024539 [exp] 122 / 6e-30 ND 51 / 4e-07
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G071800.5 pacid=42811085 polypeptide=Potri.013G071800.5.p locus=Potri.013G071800 ID=Potri.013G071800.5.v4.1 annot-version=v4.1 ATGGAGATAGAAATGGAGGCGAGAGTGAAAGCACTGAGCTACAAAGTGAAAGGAATGTCAAGAGAATCTCCTTCTCAAAAAGCCTCTCATGTCCTCGACA CTGACCTTCGCTCTCACTGGTCTACTGCCACAAACACCAAAGAGTGGATCCTTCTCGAACTTGATGAACCTTGTTTGTTATCGCATATTCGAATATATAA CAAGTCGGTGCTTGAATGGGAAATTGCAGTTGGTTTACGTTATAAGCCGGAGGCATTTGTTAAAGTTCGGCCAAGATGTGAAGCGCCTCGTCGTGATATG ATTTACCCCATGAACTATACTCCATGTCGTTATGTCCGGATATCTTGCTTACGGGGAAATCCCATAGCTATTTTTTTCATTCAGCTGATTGGGGTTTCGG TGGCTGGTCTTGAACCGGAGTTTCTACCAGTTGTTAATCACTTGTTGCCAAACATTATATCACACAAGCAAGATGCTCATGATATGCATCTTCAGTTGCT TCAAGACATAACAAACCGGTTGCTTGTCTTCCTTCCCCAACTTGAGACCGACTTAACCAGCTTCTTAGATGCTCCTGAGCAAAACTTGCGTTTTCTTGCA ATGCTTGCTGGTCCATTGTACCCAATACTTCACATTGTGAATGAAAGAGAAACTGCGAGGTGTTCAGGCAATATCTCTGATCTTGATGTTCTTAAGAGCA ATCAACCATCATCTTCCTTAACTGTTTCTTCTAACTTTGAGCCAAGAAGATCACGGAGCGCTTCTTCATTTGTCTCATCCACTTCTAGTTCCATGGTATT CCGACCTGATGTGATTTTTGTGCTGCTGAGAAAGACATATAAAGAATCTGATCTGGGCACTGTTTGCAGAATGGTGTCTAGAATCCTGCATAAGCTTATA GAGCCTGTTGCAGTGCAAGAAACATCAACCACTGCCAGTGATGTTACATCTGTCATGGATGAGACATCAAAATCTGAATTATCTAATCCTGTTCCACTTC TTGATTACTCAAGCTTGTTTGGAGAAGAATTCCAGATACCTGATGATCATTGGGACTCTAGCATTCTTAGTGTCCTTGATATAGGGGCGGTGGAAGAAGG GATTTTACATGTTCTCTATGCTTGTGCGTCACAGCCTTTGCTTTGCCGCAAATTGGCAGAGACCACTTCTGAATTTTGGTCTGCTTTACCACTTGTACAG GCATTACTTCCAGCACTTCGGCCATCTGTGAGCAGCCTTGGTGATAATTTTGATGACAACTTTTCTCCATGGAAACAGTCTTTTGTACAGCAAGCCCTTT CTCAGATTGTAGCTACATCGTCTTCGACATTGTACCACCCACTTCTTCATGCCTGTGCTGGATATTTATCGTCATTTTCACCATCACATGCTAAGGCTGC ATGCATTCTAATTGATCTGTGTTCAAGTGTCCTAGCTCCTTGGATGGCTCAGGTCATTGCAAAGGTTGACCTAGCTGTAGAGCTTCTAGAGGACCTTCTG GGCACAATTCAGGGTGCTCGTCATTCTTTGGCTCGAGCCCGTGCTGCCCTCAAATATATCGTGCTGGCCCTTTCTGGGCACATGGATGATATACTAGGGA AGTATAAGGAAGTGAAGCACAAAATTCTCTTTCTTTTGGAGATGCTAGAGCCTTTTCTCGATCCTGCCATCTATGCACTGAAGAGCACAATAGCTTTTGG AGACGTTTCTTTCACTTTTCTGGAAAAGCAGGAGCAGACTTGTGTAACTGCCCTGAATGTCATCCGTACAGCAGTGCAAAAGCCTGCTGTTCTTCCTTCT TTGGAATCTGAATGGAGGCGTGGATCAGTTGCCCCTAGTGTACTTCTCTCAATATTGGAACCTCACATGCAATTGCCTCCTGAAATTGATCTTTGCAAGT CTTCTGTTTCTAAAAGCCTTGAGCATGAAGCATCAACCGCCTCCTCTCATGCTTCCCTGGTTCGCCAAGGGGGAGATTCTTCAAAATCAAATAACCAAGA TGAGGTGGATGTTTCTGATACAGGTGTAAAGATGGATATATTCGAAGATGTCAGTCTTCTTTTTGCTCCTCAAGAGCTACAGACCATAGTACTGACAAAT GTTTCAAGCAATCCCAACAAACATATCTTGGATTCCAACCACAAGGATGCCAACTCAGAGCTGAACCATGTAATTGAAAAAAAATTTGGTGACCAGTTGC AGAATGGCTTAGTGTTAGATTGTGGTTTCATTGCAGAATACTTTAACTTGCAAGCAGACTATTTTCAACTTATAAACTACCGTGATTGTGAGCTTAGGGC CTCTGAATATCAGCGTTTGGCTTTGGACCTACACTCAGAGAATGAGATTACCGTTGAAGGTCATGATGCTGCTATTGATGCTTTGCTTCTGGCAGCAGAA TGTTATGTCAATCCCTTTTTTATGATGTCTTTCAGATCCAGTCCAAAGGTGATTCCCGTTAACATTGGTGACAATAAAAAAGGAAAAAATTATGAAATCT CAGAGCTGCGGAATGCTTGTAAAAAGAATAGTTGTGACTTGGAAACAATAGCTCTTCTCGAGAAAAAAAGGGACAAGATTGTCCTTCAACTACTGCTTGA GGCTGCTGAATTAGACAGGAAGTTTCAGAGGACATCAGATTACTACCCTGAAGGAATTGTCCAACAAGTCATAAAGTTGTCTCCCCTTGATGTACAATCT ACAGATGCAATTACCTTGGTTCGACAAAATCAAGCTTTACTGTGTAGTTTTCTTATTCAGCGACTGAAGAAAGAGCAACACTCCATGCATGAAATTCTTA TGCACTGTCTTGTCTTTCTGTTGCACTCAGCCACACAGCTCCACTGTGCTCCTGAAGAAGTGATTGATTTCATATTAGAATCTGCTGAGCATCTTAATGG GATGCTAACCTCGCTCTATTATCAGTTAAAAGAAGGCAATCTGCGGCTGGATCCAGAAAAGATACATGGGGTACAAAGGCGGTGGATGCTGCTTCAAAGG TTGGTAATTGCTTCAAGTGGCGGTGAAGGTTCAGATTTTGCGGTCAATATCAATAGTGGGTTTCGGTGTGGAAACTTAATTTCGCCATCAGCCTGGATGC ACAGAATATCTACATTTTCTTGCAGTGCTTCTCCTCTTGTTAGGTTTCTTGGTTGGATGGCTATATCTCGAAATGCAAAACAATATATAGAGGAGCGGCT CTTCCTTGCTTCAGATCTGTCACAACTTACACATTTACTATCTATATTTGCAGATGAGCTTGCAGTAATAGATAATGTCATTGACCAAAAATACGAAGAT GATAAGATTGAACAATCAGGAATTAAACAAGATATGCTGATTCACCAAAGGTCTAAAGCTGCTGATCAGCATGGAGACCAGTCTTTTCATGTCATCTATC CTGATCTCAGTAAATTCTTTCCAAATTTAAGAAAGCATTTTGAATCTTTTGGGGAGAACATTTTGGAGGCTGTTGGATTGCAGTTGAGATCTCTTTCATC CAGCGTTGTGCCTGATATATTGTGCTGGTTTTCTGATTTGTGTTCCTGGCCATTTTTTCAAAAGAACCAAATTACTTCTCAAAATAGTTATGTTCATTTG AAAGGTTATGTTGGAAAGAATGCCAAGACAATCATACTTTACATTTTAGAAGCCATCATAATCGAGCACATGGAAGCAATGGTGCCAGAGATACCTCGGG TGGTGCAAGTGCTGGTATCCCTTTGTAGAGCCTCTTATTGCTGTGTGTCATTTCTTGACTCAATAATGCATCTGTTGAAGCCTATCATTTCATATTCATT ATGCAAGGTATCTGCTGAGGAAAAAAAATTAGTTGATGATTCATGTCTTAATTTTGAGTCACTGTGCTTCGAGGAGCTTTTTCTTGATATTAGACAGAAA AATGAGAGTCAAGATCTGACTGCAGGAAAGGACTACAGCAGAGCATTGACAATTTTCATTCTGGCTTCTGTCTTTGGTGATTTGTCTTTTCAGCGTAGAA GAGAAATATTACAGTCCTTAATTTTGTGGGCGGATTTTACTTCTTTTGAGCCAACCTCATCTTTCCATGACTACCTATGTGCATTTCAGACTGTTTTGGA AAGCTGCAAGATTTTGTTAGTCAAGACATTAAGAGTCTTTGGTGTTTGCAAATTGCAGATGCCCCATGTTTCTGATACTAGCACAGGAACACTTAGTGAT AGTAGAACAGAACTTAGTTCGTGGTTTCTCAGTGATGTCTTCCATAGCTCTTGTCCACCCAAGATTTCTGAGGAGCTGGAAAGTAATATCTTTGATGATA TAGCCTCAAAGCAGAAGGATTGTAATTTATCTGTTGAGGAAATAGAAGACTTTTCTAATGTCTTAGAGAATCTCATTGCCAAGCTTAATCCAACTATTGA GCTCTGCTGGAATCTACATCATCGGTTGGCAAGGAAGCTGACTATTACATCAGCTCAGTGTTTTATGTACTCAAGATGCTTATCTTCAATTGTGCTGCAA GTTCAAAACACTCAGGAGAATGACAGTGAAAATTCTTGTGCGTTCAAGCCAGTTGACTGGTTTCCAGTTCATTGGAGGACTGGTCTAGAGGCACTTGCTG AAGTCATTATGAAGCTCCAGGAAAGCCATTGCTGGGAAGTTGCTTCTCTCATGCTTGATTGTCTACTTGGAGTACCTTGTTGTTTTCCGCTGGATAATGT TATCAATACCATCTGTTTGGTAATAAAAAGTTTTTCTTGCTGTGCACCAAAAATATCTTGGCGCTTGCGATCTGATAAATGGTTGTCGATGCTGTTTGCA AGAGGTTTCCATAATCTCCATGAGAGTGATGGGCATCTTGCTGATCTGTTTGTTACACTGCTGGGTCATCCTGAGCCTGAGCAACGGTTTGTTGTTCTTC AGCACTTGGGTAGATTGGTTGGCCAAGACATGCATGGAGAACCAGTTTTACAGTCTAATACCATTAGTTATAAGTTACTATCACCAGACTTAGTTCTTTC AGTTCCCGATTCATTTCTGTCTCTTGTGGTGTCAAGTACTTGGGATCAGGTGGTTTTGTTGGCATCATCTGATTCTTTATTGCCTTTGAAGACTCGCGCT TTGGCACTTCTTGTAGCTTATATGCCATATGCAGGCAGGCAGCAGTTACAATCCTTTCTTACTGCAGCTGATAGTGTTCTCCATGTTCTGGGAAAGGTTA CATATCCAACATGTGAAGGTCCATTATTACGGCTTTCATTGGCACTTTTTGCTGGTGCCTGCCTGTACTCTCCTGCTGAAGACATTTCCTTGATATCTCA AGATATATGGAGGAATATAGAGACCATAGGATTGTCAAGAAGTGAAGGCAAGCTTGGTGGTCTGGAGAAAAATGCTTGTGAAGTCTTGTGTAGATTGAGA AATGAAGGGGATGAAGCAAAAGAGGTTCTGAAAGAAGTGCTCTCTAGAAATCCCTCAAAACAAGTAGACCCAGATTTTGGGAGCACCCGGGAATCAATTC TTCAGGTCCTTGCCAACTTAACTTCAGTTCAATCGTGTTTTGATATGTTCTCAAAGAAAATTGACCAAGAGGCAATGGAACTAGAAGAGGCTGAAATAGA ATTAGAAATTCTTCAAAAAGAACATGCAGTACAAGAATCATCAAAAGATTCCAAAGAGGAGAGGGATATTCCTTGGATAACTGCTTCTGTGAAAGAGGAT AACCGCCTTCAGGAAATCAAGGATCGCATTCGCTCACTAGAAAAGTCCAAGCTCCAAGAAGACATAGTAGCCCGCAGGCAAAAGAAGCTTCTTGTGAGAC GTGCTCGTCAGAAATATCTAGAAGAGGCTGCTATACGAGAAGAGGAACTTCTGCGTGAACTTGATAGGGAAAAGGCTGCTGAAGCAGAAAAAGAGATTGA GAGACAGCGGTTGCTGGAACTTGAGTGCGCAAAAACTAGGGAGCTCCGACACAATCTTGACATGGAGAAGGAGAGGCAAACACAGAGAGAACTTCAGCGT GAACTGGAGCAGGCTGAATCTGGACTACGATCATCAAGGCGTGACTTTCCTTCATCCACCCATGGCAGTCGGCCTCGGGATAGGTACCGAGAAAGGGAAA ATGGAAGATCAAGTAATGAAGGGAGTGCAAGAACAAATGCTGGCAGCTTGCAGCCTGATACTGCCACTAGTTCATCAATGGCTACGCCAGCTATTGTGTT GTCTGGCTCTCGACCATTTTCAGGCCAGCCACCAACCATTCTTCAATCTCGTGACCGTCAAGATGATTGTGGCAGTAGTTACGAAGAAAATTTTGAAGGA AGCAAGGACTCTGGCGACACTGGCAGTGTTGGGGATCCAGATTCGATAACAGCATTTGATGGGCAATCTGTTGGATTTGGGTCCGCACAAAGGCATGGAT CTAGAGGGAGTAAGTCCAGGCAGGTGATGGAGCGGAGAGAGGGAAGAGAACGAGATGGAAGACGGGAAGGTAAGTGGGAGAGAAAACATTCATGA
AA sequence Show only first row Show all	>Potri.013G071800.5 pacid=42811085 polypeptide=Potri.013G071800.5.p locus=Potri.013G071800 ID=Potri.013G071800.5.v4.1 annot-version=v4.1 MEIEMEARVKALSYKVKGMSRESPSQKASHVLDTDLRSHWSTATNTKEWILLELDEPCLLSHIRIYNKSVLEWEIAVGLRYKPEAFVKVRPRCEAPRRDM IYPMNYTPCRYVRISCLRGNPIAIFFIQLIGVSVAGLEPEFLPVVNHLLPNIISHKQDAHDMHLQLLQDITNRLLVFLPQLETDLTSFLDAPEQNLRFLA MLAGPLYPILHIVNERETARCSGNISDLDVLKSNQPSSSLTVSSNFEPRRSRSASSFVSSTSSSMVFRPDVIFVLLRKTYKESDLGTVCRMVSRILHKLI EPVAVQETSTTASDVTSVMDETSKSELSNPVPLLDYSSLFGEEFQIPDDHWDSSILSVLDIGAVEEGILHVLYACASQPLLCRKLAETTSEFWSALPLVQ ALLPALRPSVSSLGDNFDDNFSPWKQSFVQQALSQIVATSSSTLYHPLLHACAGYLSSFSPSHAKAACILIDLCSSVLAPWMAQVIAKVDLAVELLEDLL GTIQGARHSLARARAALKYIVLALSGHMDDILGKYKEVKHKILFLLEMLEPFLDPAIYALKSTIAFGDVSFTFLEKQEQTCVTALNVIRTAVQKPAVLPS LESEWRRGSVAPSVLLSILEPHMQLPPEIDLCKSSVSKSLEHEASTASSHASLVRQGGDSSKSNNQDEVDVSDTGVKMDIFEDVSLLFAPQELQTIVLTN VSSNPNKHILDSNHKDANSELNHVIEKKFGDQLQNGLVLDCGFIAEYFNLQADYFQLINYRDCELRASEYQRLALDLHSENEITVEGHDAAIDALLLAAE CYVNPFFMMSFRSSPKVIPVNIGDNKKGKNYEISELRNACKKNSCDLETIALLEKKRDKIVLQLLLEAAELDRKFQRTSDYYPEGIVQQVIKLSPLDVQS TDAITLVRQNQALLCSFLIQRLKKEQHSMHEILMHCLVFLLHSATQLHCAPEEVIDFILESAEHLNGMLTSLYYQLKEGNLRLDPEKIHGVQRRWMLLQR LVIASSGGEGSDFAVNINSGFRCGNLISPSAWMHRISTFSCSASPLVRFLGWMAISRNAKQYIEERLFLASDLSQLTHLLSIFADELAVIDNVIDQKYED DKIEQSGIKQDMLIHQRSKAADQHGDQSFHVIYPDLSKFFPNLRKHFESFGENILEAVGLQLRSLSSSVVPDILCWFSDLCSWPFFQKNQITSQNSYVHL KGYVGKNAKTIILYILEAIIIEHMEAMVPEIPRVVQVLVSLCRASYCCVSFLDSIMHLLKPIISYSLCKVSAEEKKLVDDSCLNFESLCFEELFLDIRQK NESQDLTAGKDYSRALTIFILASVFGDLSFQRRREILQSLILWADFTSFEPTSSFHDYLCAFQTVLESCKILLVKTLRVFGVCKLQMPHVSDTSTGTLSD SRTELSSWFLSDVFHSSCPPKISEELESNIFDDIASKQKDCNLSVEEIEDFSNVLENLIAKLNPTIELCWNLHHRLARKLTITSAQCFMYSRCLSSIVLQ VQNTQENDSENSCAFKPVDWFPVHWRTGLEALAEVIMKLQESHCWEVASLMLDCLLGVPCCFPLDNVINTICLVIKSFSCCAPKISWRLRSDKWLSMLFA RGFHNLHESDGHLADLFVTLLGHPEPEQRFVVLQHLGRLVGQDMHGEPVLQSNTISYKLLSPDLVLSVPDSFLSLVVSSTWDQVVLLASSDSLLPLKTRA LALLVAYMPYAGRQQLQSFLTAADSVLHVLGKVTYPTCEGPLLRLSLALFAGACLYSPAEDISLISQDIWRNIETIGLSRSEGKLGGLEKNACEVLCRLR NEGDEAKEVLKEVLSRNPSKQVDPDFGSTRESILQVLANLTSVQSCFDMFSKKIDQEAMELEEAEIELEILQKEHAVQESSKDSKEERDIPWITASVKED NRLQEIKDRIRSLEKSKLQEDIVARRQKKLLVRRARQKYLEEAAIREEELLRELDREKAAEAEKEIERQRLLELECAKTRELRHNLDMEKERQTQRELQR ELEQAESGLRSSRRDFPSSTHGSRPRDRYRERENGRSSNEGSARTNAGSLQPDTATSSSMATPAIVLSGSRPFSGQPPTILQSRDRQDDCGSSYEENFEG SKDSGDTGSVGDPDSITAFDGQSVGFGSAQRHGSRGSKSRQVMERREGRERDGRREGKWERKHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.013G071800 [exp]	0	1
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	1.00	0.9100
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	1.41	0.9048
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040300 [exp]	5.65	0.8637
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.012G088500 [exp]	5.74	0.8565
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	6.00	0.8720
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	6.24	0.8524
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	6.32	0.8747
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	6.48	0.8502
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	7.74	0.8814
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	7.74	0.8782

Compare expression of checked genes

Potri.013G071800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.