Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17620 582 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G044100 [exp] 521 / 0 AT5G17620 467 / 4e-166 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013643 [exp] 589 / 0 AT5G17620 558 / 0.0 unknown protein Lus10001340 [exp] 481 / 3e-172 AT5G17620 469 / 9e-168 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06694 [poplar] [flax] Plant_NMP1 Plant nuclear matrix protein 1 (NMP1)
Representative CDS sequence Show only first row Show all	>Potri.013G072300.1 pacid=42810981 polypeptide=Potri.013G072300.1.p locus=Potri.013G072300 ID=Potri.013G072300.1.v4.1 annot-version=v4.1 ATGGCAGCGAAGCAAATGGAAGATATACAGAGAAAACTAGGGATGCTGAATTATTCAAGAGCCAATGCTCCTGCTCAGTCTCTTCTTTTTGCCGGCATGG AACGTTACGCTCTTCTCGAATGGCTCTTCTTCAAGTTATTGGGTGATAAATCACCATTCTCGCAGCAAAATCTACAAGGAGATGCTATGGATCGTGACGA AGAGACGGCTCGTATCCAATATCTGGCAGAGATTGCAAAGTTTCTGGGCATCACTTCAATTATAGATACAGAAGCCATCCAAGGGCGAGGAAGCTATGAA GACCGAACTGAAATGCTTCGCCTAATTGTAGATCTCGTGGAGGCTAGCATCTATGCTGATAATCCTGAATGGAGTGTAGATGAACAGGTGGCAAAAGACA TACAACTCATAGATTCTATTGCAGAGAAACAAGCTCTAATATTCTCAGAGGAGTGCAAGCTGTTCCCTGCTGATGTGCAGATTCAATCCATTTATCCATT ACCAGATGTATCTGAGTTGGAGACAAAGCTTGCGGAACAGTCAAAAATACTTCAGAGTCTTCAGCAGAAAATTGATGACTTGGCATCTAAGCATGCATAC AATCCAGATGAGGAGTATTCTGAGGTGGAATCTCATCTCCGGGCACATTTGGAATCTTTCCTAGAAACTGCAAGATCATTCAATGTGATATACACAAAGG AAATACGCCCTTGGACGCACATGATGGAAGTGCCACAGCTTCATGGGTTTGGACCAGCTGCCAACCGGTTGTTGGAGGCATACAAGATGCTTTGGAAGTT CCTAGGGAACTTAAGAAATCTTAGAGACTCGCATGCAGCTCTTGCTGTTGGATCTTCTGAAACAAAAGCTGGCGAGCCCTCTTCTGTTACAAGAATAATT TCAGAGTGCGAGTCTGCACTGACATTCTTAAATCGTGATCTTGGCATTCTCTCGGCTTCGATTTCACGTGAGAAAGGTAACAATGCGAGTTTATGA
AA sequence Show only first row Show all	>Potri.013G072300.1 pacid=42810981 polypeptide=Potri.013G072300.1.p locus=Potri.013G072300 ID=Potri.013G072300.1.v4.1 annot-version=v4.1 MAAKQMEDIQRKLGMLNYSRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITSIIDTEAIQGRGSYE DRTEMLRLIVDLVEASIYADNPEWSVDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLAEQSKILQSLQQKIDDLASKHAY NPDEEYSEVESHLRAHLESFLETARSFNVIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLWKFLGNLRNLRDSHAALAVGSSETKAGEPSSVTRII SECESALTFLNRDLGILSASISREKGNNASL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17620			unknown protein		Potri.013G072300 [exp]	0	1
					Potri.008G089401 [exp]	1.41	0.9542
					Potri.003G104800 [exp]	1.41	0.9547
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	1.73	0.9502
AT5G46850			unknown protein		Potri.003G095200 [exp]	2.23	0.9448
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.008G158500 [exp]	3.16	0.9372
AT5G12260			unknown protein		Potri.012G121826 [exp]	3.46	0.9476
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	4.89	0.9447
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Potri.006G199600 [exp]	6.92	0.9204
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	6.92	0.9381
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	9.16	0.9279

Compare expression of checked genes

Potri.013G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.