Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64850 248 / 9e-86 Calcium-binding EF hand family protein (.1) AT4G37445 65 / 1e-13 unknown protein AT2G41200 41 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051200 [exp] 61 / 3e-12 AT4G37445 160 / 7e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010653 [exp] 254 / 5e-88 AT1G64850 245 / 3e-84 Calcium-binding EF hand family protein (.1) Lus10013613 [exp] 254 / 6e-88 AT1G64850 244 / 3e-84 Calcium-binding EF hand family protein (.1) Lus10001408 [exp] 74 / 6e-17 AT4G37445 214 / 6e-72 unknown protein Lus10008568 [exp] 39 / 0.0007 AT2G41200 138 / 3e-42 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.013G072600.2 pacid=42811587 polypeptide=Potri.013G072600.2.p locus=Potri.013G072600 ID=Potri.013G072600.2.v4.1 annot-version=v4.1 ATGGGACAGGTCCTAGACAAATTTCACGGTAAGCAGTGGAGGGAAAAACAAATAAGGTTGATTGCAGACAAGGCGTATAATCACATAAAAAAACATTCGG GAAGTGCTAATCTCACTTTTGAAGACCTGTATATTGCTGTTCTACTTGTGTACAATGATATTAACAAGCGCTTGCCTGGTCCCCATTTTGATCCTCCTTC GAAAGAGCAAGTCAGAGCCATGATGCAGGCATGCGATATGAACCTTGATGGTGAACTTAACCATGAAGAATTTGTGAAGTTTATGCAGCAGTTAACAGCA GACACGTTCATTGTGGTTAGTCAGGGGTTGATTATCACTTTGGTTGTGGCCCCAACAGTTGCCATGGCAACAAAGAAGGCTACTGAGGGTGTCCCTGGTG TTGGAAAGGTGGTGCGAAAATTACCCACCTCAATCTATGCATCCCTCGTTACTCTTGCAATTGTGTGGTTTCAAACTGGACGTCAGGATGTTGACTAG
AA sequence Show only first row Show all	>Potri.013G072600.2 pacid=42811587 polypeptide=Potri.013G072600.2.p locus=Potri.013G072600 ID=Potri.013G072600.2.v4.1 annot-version=v4.1 MGQVLDKFHGKQWREKQIRLIADKAYNHIKKHSGSANLTFEDLYIAVLLVYNDINKRLPGPHFDPPSKEQVRAMMQACDMNLDGELNHEEFVKFMQQLTA DTFIVVSQGLIITLVVAPTVAMATKKATEGVPGVGKVVRKLPTSIYASLVTLAIVWFQTGRQDVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64850			Calcium-binding EF hand family...		Potri.013G072600 [exp]	0	1
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.008G136040 [exp]	1.41	0.8939
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Potri.017G007000 [exp]	1.73	0.8647
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.003G110901 [exp]	2.00	0.8934
AT5G10980			Histone superfamily protein (....		Potri.007G096700 [exp]	6.24	0.8060	HTR911
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.004G055000 [exp]	9.79	0.7700
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	11.87	0.7594
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	12.00	0.7677	PtrMsrB3
AT5G10980			Histone superfamily protein (....		Potri.005G072300 [exp]	12.64	0.8015
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.008G167600 [exp]	13.41	0.7902
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	16.24	0.8240

Compare expression of checked genes

Potri.013G072600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.