Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 535 / 0 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 488 / 3e-163 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G53470 480 / 2e-158 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 465 / 7e-153 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 461 / 4e-151 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 440 / 4e-143 Mechanosensitive ion channel family protein (.1) AT2G17010 310 / 1e-94 Mechanosensitive ion channel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G072800 [exp] 1082 / 0 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 611 / 0 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 575 / 0 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.001G384100 [exp] 468 / 2e-153 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 467 / 8e-153 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 457 / 3e-149 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 426 / 4e-138 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036586 [exp] 786 / 0 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036587 [exp] 769 / 0 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10029701 [exp] 661 / 0 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 575 / 0 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 555 / 0 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 553 / 0 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 542 / 0 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10027617 [exp] 525 / 9e-175 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10005556 [exp] 443 / 1e-147 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10023990 [exp] 412 / 1e-134 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.013G073000.3 pacid=42810845 polypeptide=Potri.013G073000.3.p locus=Potri.013G073000 ID=Potri.013G073000.3.v4.1 annot-version=v4.1 ATGGAGCTGGCTATCATGGAGGTTCAAAACCAAGAGTACCCCAACACAGACCAAGTGGTTCTATTCATAGATCAACCAGACTCCAAACTCAAAATGTCGT CGCCACCACCACAGCAAGAACATTCCAAACTCAAACAGTCACCATCACCACAGCAACCAGACATTAAAGACCCTAAATTAACCCAAGCAAGAACAAAAAC CCTCCGCCGTCTCAACTTCTCCAAACCCAAATCTCGTTTCACTGAAACTAACTACCCTCCCCATTCCAAAACCTTCCCTGAATCCGAAGAATACCAACCC TTAAACCCTCCAGAAAGCGCTACCTCCACAGATGAAGACGATGACGAAGAATGGTTTGAAAATGAAGAAGAAGAAGTTGATGCTGGAGAGGCCAAAAAAC ATTCCAAGTATCGAGCGAAAAGGAAAAGAAAGATAAAAAAGAGAGCCGTGATTGAGTTCATATTGTTTCTCATAATCATGACCTGCTTAATTCTCTCTTT AACCGTTGAATCCCTCAGAAACAAGGTCCTTTGGGGTCTAGTTTTATGGAAATGGTGCCTTATGGTCCTGGTTCTCTTCTGTGGCCGCCTTGTGTCGGTT TGGGTTGTAGGTTTTCTTGTTTTTCTCATAGAACGCAATTTCATGCTCAGAGAAAAAGTACTCTACTTTGTTTTTGGTTTGCGCAAGAGTTTTCAACATT GTGCATGGCTAGGATTGGTTCTACTTGCATGGATGAGTATGTTCCATGATGTCCACAAATCCAACAAGGTCTTAAAGAGGGTTTTCCGTGTTCTAATTGC TGTCCTCATTGGAGCTACAATATGGTTACTAAAGATTTTACTTGTCAAGGTTCTTGCTTCATCTTTCCATGTTGCTACTTTCTTTGACCGCATGAAAGAA AGCGTCTTCCACCACTACATTCTCGATACACTCTCTGGTCCACCATTAGATGAGGATGAGAGAGAAACTCCTCGTCGACGGACGCTAAGGCATTCGAAGA CATTGCCGGCGAAACTGAGGGAGAGGGCATCAAGATCTAAGAGGTATGAGTCGAGGAGCATCGATATGGAGAGGTTGAGGAAGTTAAGTATGATGAGCAG GGCAACTGCTTGGAATAAAAAGAGGTTGGTGAGTTACATCAAGTCTTCAGGGCTGTCAACGATTTCGAGGACGGTCGATGATTTTGGTAATGCAGAATCG GAGATCAACAGTGAATGGGAGGCTAGAGGCACTGCTCAAAGAATTTTTAGGAATGTTGCCAAATCCGGTGCCAAGTATATAGACGAGGAAGATCTATTGA GTTTCTTAAAGACCGTGGAGATTCATACCATATTTCCTCTCTTTGAAGGAGCTGTTGAGACTGGAAAAATCACAAAATCTTCTTTCAGAAATTGGGTGGT GCATGCCTATGTTGAGAGAAAAGCATTGGCACATTCCTTGAATGATACCAAGACTGCTGTACAGCAACTTCACAAGTTAGCAAGTGCAATAGTGACTGTA ATTATAATTGTGATCTCCCTTTTGGTAACGGGATTGGCGACGACCAAGGTTTTAGTTGTTTTCACATCTCAACTTCTACTCGTGGGGTTCATGTTCCAAA ACACTTGCAAAACTATCTTTGAGTCCATCATTTTCGTCTTTGTTATGCATCCTTTTGATGTTGGCGATCGTTGTGTTATTGATGGCGTACAGATGATTGT GGAAGAGATGAACATTTTGACAACTGTGTTCTTACGGTATGATGCGGAGAAGATATATTATCCCAATTCTGTTCTTCTTACAAAGCCTATTAGTAATTTT AGAAGAAGTCCAGACATGGGGGATGCTATTGACATCACCATTGATGTCTCCACTTCTGTTGATGACTTCAATGCTCTCAAGAAAGCTATACAACTATACA TTGAGAGCAAACCAAAGCACTGGAACCCAAAGCACACATTGCTGGTGAAGGAGATAGAAAATGTAAACAAGATGAAGCTAGCTCTATGTGTTCAACACAC CATGAACCATCAAAACTACGGGGAAAAGAGCGCTCGAAGATCGGAGCTTGTTTTTGAACTAAAGAAGATTTTTGACAACCTTGGCATTAAGTACCATCTC CTTCCACAACAAGTACATCTTACGCATGTAAACATGACTAGCAATGGGGGAGTGTCAATGTAA
AA sequence Show only first row Show all	>Potri.013G073000.3 pacid=42810845 polypeptide=Potri.013G073000.3.p locus=Potri.013G073000 ID=Potri.013G073000.3.v4.1 annot-version=v4.1 MELAIMEVQNQEYPNTDQVVLFIDQPDSKLKMSSPPPQQEHSKLKQSPSPQQPDIKDPKLTQARTKTLRRLNFSKPKSRFTETNYPPHSKTFPESEEYQP LNPPESATSTDEDDDEEWFENEEEEVDAGEAKKHSKYRAKRKRKIKKRAVIEFILFLIIMTCLILSLTVESLRNKVLWGLVLWKWCLMVLVLFCGRLVSV WVVGFLVFLIERNFMLREKVLYFVFGLRKSFQHCAWLGLVLLAWMSMFHDVHKSNKVLKRVFRVLIAVLIGATIWLLKILLVKVLASSFHVATFFDRMKE SVFHHYILDTLSGPPLDEDERETPRRRTLRHSKTLPAKLRERASRSKRYESRSIDMERLRKLSMMSRATAWNKKRLVSYIKSSGLSTISRTVDDFGNAES EINSEWEARGTAQRIFRNVAKSGAKYIDEEDLLSFLKTVEIHTIFPLFEGAVETGKITKSSFRNWVVHAYVERKALAHSLNDTKTAVQQLHKLASAIVTV IIIVISLLVTGLATTKVLVVFTSQLLLVGFMFQNTCKTIFESIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTVFLRYDAEKIYYPNSVLLTKPISNF RRSPDMGDAIDITIDVSTSVDDFNALKKAIQLYIESKPKHWNPKHTLLVKEIENVNKMKLALCVQHTMNHQNYGEKSARRSELVFELKKIFDNLGIKYHL LPQQVHLTHVNMTSNGGVSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G073000 [exp]	0	1
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054801 [exp]	4.58	0.7810
AT5G18840			Major facilitator superfamily ...		Potri.010G026500 [exp]	9.38	0.7766
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	14.07	0.7492	SKS1.3
AT5G21105			Plant L-ascorbate oxidase (.1....		Potri.009G159700 [exp]	16.24	0.6854	AO1.4
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117600 [exp]	17.91	0.6618	CYP72D1
AT5G57340			unknown protein		Potri.018G090000 [exp]	19.28	0.7840
AT1G53440			Leucine-rich repeat transmembr...		Potri.006G014232 [exp]	23.13	0.7672
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.002G201900 [exp]	24.97	0.7514
AT1G04280			P-loop containing nucleoside t...		Potri.008G162400 [exp]	26.05	0.7518
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.015G074600 [exp]	29.51	0.7419

Compare expression of checked genes

Potri.013G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.