Plant FIBer expression Database

Potri.013G073100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17610 167 / 9e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF16029 DUF4787 Domain of unknown function (DUF4787)
Representative CDS sequence
>Potri.013G073100.1 pacid=42811757 polypeptide=Potri.013G073100.1.p locus=Potri.013G073100 ID=Potri.013G073100.1.v4.1 annot-version=v4.1
ATGGCTTATTATTACTTTGATGATAAGTCTCGACTAAATTCCTTTCTTACCTTTTTCTTTCTATTGGTATTACTATTTATCAACCCTTCTTCAGTTCTCT
CCAAGTCTCCTCGCCCGATTACTGATGTTGAGGTCAGGCAAATTAAGAATGAGTGCTATGCTGATATAGAGAGTGGGCTGTGGGGTCAACAATGCAAAAC
TTCGATGACAGCAAAGGAGAATTGCGCTTTGAAGTGTCTTTCTCCAATTTGTTATGAGCTTATATATGAGAGTGATCCGCTTGAAGAAGGAGAGAAAGAT
TTCACAAGAAGTCAAGAGTACAAGTACTGTATGTATAAGAAATCAATGGGAGAGTCCCTCGAGGGTATTAAGGGAGCCTTTGACATGTAG
AA sequence
>Potri.013G073100.1 pacid=42811757 polypeptide=Potri.013G073100.1.p locus=Potri.013G073100 ID=Potri.013G073100.1.v4.1 annot-version=v4.1
MAYYYFDDKSRLNSFLTFFFLLVLLFINPSSVLSKSPRPITDVEVRQIKNECYADIESGLWGQQCKTSMTAKENCALKCLSPICYELIYESDPLEEGEKD
FTRSQEYKYCMYKKSMGESLEGIKGAFDM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17610 unknown protein Potri.013G073100
[exp]
0 1
AT5G37290 ARM repeat superfamily protein... Potri.001G225300
[exp]
2.82 0.8683
AT4G36720 HVA22K HVA22-like protein K (.1) Potri.009G113400
[exp]
3.46 0.8181
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Potri.004G197000
[exp]
4.24 0.8256
Potri.001G142300
[exp]
5.09 0.8171
AT3G44680 HDA09, HDA9 histone deacetylase 9 (.1) Potri.001G460000
[exp]
8.48 0.8091 Pt-HDA9.2,HDA904
AT3G15750 Essential protein Yae1, N-term... Potri.001G024000
[exp]
12.72 0.8207
Potri.001G407401
[exp]
12.96 0.8073
AT2G27110 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.... Potri.012G097200
[exp]
13.78 0.8280
AT4G04320 malonyl-CoA decarboxylase fami... Potri.011G010400
[exp]
15.74 0.8226
AT1G26665 Mediator complex, subunit Med1... Potri.003G146900
[exp]
16.49 0.8115

Potri.013G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.