Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03570 795 / 0 Protein of unknown function (DUF3550/UPF0682) (.1) AT4G40050 527 / 0 Protein of unknown function (DUF3550/UPF0682) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072200 [exp] 568 / 0 AT4G40050 753 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Potri.007G096800 [exp] 558 / 0 AT4G40050 750 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020328 [exp] 874 / 0 AT3G03570 771 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Lus10005664 [exp] 872 / 0 AT3G03570 769 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Lus10023156 [exp] 548 / 0 AT4G40050 752 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Lus10012756 [exp] 438 / 6e-148 AT4G40050 620 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12070 [poplar] [flax] SCAI Protein SCAI
Representative CDS sequence Show only first row Show all	>Potri.013G073200.3 pacid=42812310 polypeptide=Potri.013G073200.3.p locus=Potri.013G073200 ID=Potri.013G073200.3.v4.1 annot-version=v4.1 ATGACGGAACAACAAATTATGAACAACAATACCAACAGTAATATTCCGGTGAGCGAAGTGTATTGGTCTCTCGTCGATAAAGCCGATAAAAAGTTCTCCA AAATAAGAGACCTGCCTTACTATGAACGCAACAGGTATGATACGTATTTTTACAAGGTATTCAAGGTATACACGCAATTGTGGAAATTTCAACAGGAAAA TCGGCAGAAACTGGTAGAAGCGGGGTTAAAACGATGGGAGATAGGGGAGATTGCATCGCGGATTGCTCAGCTTTATTATGGGCAGTATATGAGGACGAGT GATTCCAGCTATCTGTCTGAATCCTATGTTTTTTATGAAGCAATTTTGAGTAGGGAGTATTTCAAAGATGGATTGTTTCAGGATCTTAATCTGGCCAATA AACAACTCAGGTTTTTTGCTCGTTTTCTGATGGTTTCTTTGGTTTGGAACCGCCGCGAAATGGTTCACCAGTTGGTTAATCTACTCAAAATCTTGGTTGA TGAATGTAGGAAGGCATTCCAGGAAACTGATTTTAAAGAATGGAAGCTGGTGGTTCAGGAAATAAGCAGATTTTTGAAAGCTGACACCGCTTTTATGAAT ATCAGGCCTTTAAGATACAGTCTTGTACTGGATCTTCATCCAGATTCACTACCACGTGTTGCAACTAGAAGAAGCTTAAAATTACGAGATGCAATATTGA GCAGCTACCATCATAATGAGGTCAAGTTTTCAGAGCTGACAGTAGACACATTCAGGATGCTTCAGTGCCTGGAGTGGGAACCAAGTGGTTCATTTTATCA GTCCAGCAGCGCTAAAATTGGTCAGAATGGGGGTTCAGGGTCCAGTCGCACTAACCATGCCCAGGATATAGCTGATCCTACGTTGCCACTAAACTCAAGG AAAGCTGTCCTGTATCGACCCTCTGTAACTCATTTTTTAGCAGTTCTGGGCACAATTTGTGAGGAGCTAGCCCCTGATGGAGTTATCTTGATATATTTGT CTGCTTCAGGAAGAGTTGGACACACTATTTCACCTCCCTCAGGTGCTGGAACTTCTATCAACACTACAGAGAACACAGTGAGAAACTTTCAGTCTCATGC CATGTACTTGGATGCAGTCACCATTTCTCCATTTAGCTCATCAAGTAATATTCCAAATCCTTCTTCAAGGCAAAGTAAATCGGACTGCTTGCATTTTGGT ACACGTGGGAATGGAGGATTAAACAGCATTTATCCCACTGACTTAATCCCATTTACGAGAAGGCCACTTTTTATAGTCATTGACAGTGATAGCAGCGAAG CATTCAAGGCAATAAGTGGAGCTGAGAAAGGAGAGCCAGCTGCGATCATCCTATCACCAAGCTGTTCAATTCCTCTTACCACAGCTGATTCTTCTCGTCA TCACAGTGGTAGTCTGCTCACCATGTTTCTGACAACTCCTCTGCAGGCTTTTTGTCTGTTAATTGGTTTGTCAGGACCTGATGTCGAAATGGATACATAT AACAAGGCTGAGAAGCTGCTTTCTTCATCATTGAATGCCTGGGGTTTGACTCTGGCAACATCAGACATGCTCGATCCTGTTTGGGCACAGATTTTAGGCG ACCCATTTCTCAGGCGTCTTCTTTTGAGATTCTTATTTTGCCGGGCAGTGTTGACACTATTTGCACCATCCTCTGGGAAGAAGGAATTTCATCCTGAGTG CATGCCATCTCTTCCGACATCTCTCCAGCCTAATGCCTCCGCATGTCAAACCGTGGTTCTGCAGATGGCCAACATTTTTGGCGCAACAAAGAAATTCATT TTCTTAGAAGGCATTGTACTTCCCGCACACAGTGATGTAGAGATGGCATCGTCCTCGTAA
AA sequence Show only first row Show all	>Potri.013G073200.3 pacid=42812310 polypeptide=Potri.013G073200.3.p locus=Potri.013G073200 ID=Potri.013G073200.3.v4.1 annot-version=v4.1 MTEQQIMNNNTNSNIPVSEVYWSLVDKADKKFSKIRDLPYYERNRYDTYFYKVFKVYTQLWKFQQENRQKLVEAGLKRWEIGEIASRIAQLYYGQYMRTS DSSYLSESYVFYEAILSREYFKDGLFQDLNLANKQLRFFARFLMVSLVWNRREMVHQLVNLLKILVDECRKAFQETDFKEWKLVVQEISRFLKADTAFMN IRPLRYSLVLDLHPDSLPRVATRRSLKLRDAILSSYHHNEVKFSELTVDTFRMLQCLEWEPSGSFYQSSSAKIGQNGGSGSSRTNHAQDIADPTLPLNSR KAVLYRPSVTHFLAVLGTICEELAPDGVILIYLSASGRVGHTISPPSGAGTSINTTENTVRNFQSHAMYLDAVTISPFSSSSNIPNPSSRQSKSDCLHFG TRGNGGLNSIYPTDLIPFTRRPLFIVIDSDSSEAFKAISGAEKGEPAAIILSPSCSIPLTTADSSRHHSGSLLTMFLTTPLQAFCLLIGLSGPDVEMDTY NKAEKLLSSSLNAWGLTLATSDMLDPVWAQILGDPFLRRLLLRFLFCRAVLTLFAPSSGKKEFHPECMPSLPTSLQPNASACQTVVLQMANIFGATKKFI FLEGIVLPAHSDVEMASSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03570			Protein of unknown function (D...		Potri.013G073200 [exp]	0	1
					Potri.008G195300 [exp]	12.36	0.6513
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	21.77	0.6379
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	22.44	0.5751
AT1G57600			MBOAT (membrane bound O-acyl t...		Potri.013G000600 [exp]	22.80	0.6052
AT5G10320			unknown protein		Potri.005G073600 [exp]	24.91	0.6122
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.003G137100 [exp]	32.71	0.6488
AT5G13560			unknown protein		Potri.008G048100 [exp]	36.22	0.4916
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	60.39	0.5807
AT5G04480			UDP-Glycosyltransferase superf...		Potri.008G029400 [exp]	60.93	0.5526
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Potri.001G243600 [exp]	65.66	0.5510

Compare expression of checked genes

Potri.013G073200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.