Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	F3H1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 711 / 0 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 342 / 4e-112 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 341 / 9e-112 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT4G12310 339 / 5e-111 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G12320 337 / 5e-110 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT2G45560 336 / 7e-110 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G01280 336 / 1e-109 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT4G12300 327 / 5e-106 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT3G26330 326 / 6e-106 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G06900 325 / 1e-105 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069100 [exp] 493 / 4e-171 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G274600 [exp] 460 / 4e-158 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 388 / 5e-130 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 386 / 5e-129 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 384 / 3e-128 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 379 / 2e-126 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 373 / 4e-124 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.007G040200 [exp] 373 / 4e-124 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 369 / 1e-122 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021158 [exp] 719 / 0 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 632 / 0 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10040525 [exp] 391 / 1e-134 AT5G07990 362 / 2e-123 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 391 / 5e-131 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 388 / 5e-130 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 385 / 1e-128 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 367 / 1e-121 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10008918 [exp] 356 / 1e-117 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 352 / 6e-116 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10017961 [exp] 345 / 4e-113 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.013G073300.1 pacid=42812182 polypeptide=Potri.013G073300.1.p locus=Potri.013G073300 ID=Potri.013G073300.1.v4.1 annot-version=v4.1 ATGTCTCCTCTAATACTTTACTCGGCACTATTGGCCATCTTCGTCTATTGCCTTCTTCAGCTGCGAAGCCTTCGTGACCGTCACGGCAAACCCCTTCCAC CAGGCCCAAAACCATGGCCCCTAGTTGGAAACCTACCCCATTTGGGGCCTATGCCTCACCACTCCATGGCAGCCCTGGCAAAGACTTATGGACCTCTCAT GCACCTCCGGTTCGGCTTCGTCGACGTGGTGGTGGCGGCATCGGCTTCCGTGGCTGCTCAGTTTTTGAAAGTACATGATTCCAACTTCTCTAGCAGGCCA CCAAACTCCGGTGCCAAACATATTGCATATAATTACCAAGACCTTGTGTTTGCACCCTATGGGCCACGGTGGCGCATGCTTCGGAAGATCAGCTCCGTCC ATCTCTTCTCGGCTAAGTCCTTGGATGATTTTAGACATATTAGACAGGAAGAAGTGGCAGTGCTTACAGGGGCACTGACAAGATCAGGTCCAACTACACC AGTGAACTTGGGTCAATTGCTCAATGTTTGCACAGCTAACGCTCTTGGGAGGGTGATGCTAGGGAGGCGCGTGTTCGGCGACGGCAGTGGTGATGGTGAC CCGAAGGCAGATGAATTCAAGTCAATGGTGGTGGAGGTAATGGTGTTGGCTGGTGTGTTTAACATCGGTGACTTTGTTCCTGCTTTGGAGTGGCTTGACT TGCAGGGTGTAGCAGCTAAAATGAAGAAGCTTCATAAGAGATTTGATGCTTTCTTGACTAACATTGTAGAGGAGCATAAAACCAGCAGCAGCACTGCTTC TGTTAGATCAGAGAAGCACACTGATCTGTTGAGTACGTTGATTGCTCTGAAGGAGCAGCAGGATGTTGATGGTGAGGAAGGGAAGCTGACTGACACTGAA ATCAAAGCATTGCTCTTGAATATGTTCACTGCTGGCACCGACACATCGTCGAGCACAGTGGAATGGGCTATTGCAGAGCTTATACGGCACCCAGACATCC TGGCCCAGGTCAAAAAAGAGCTCGACTCCGTCGTCGGTCGAGACCGTCTGGTAACTGAATTGGACTTGGCGCAACTCACCTACCTCCAAGCCGTGGTCAA GGAAACCTTCCGGCTCCACCCTTCAACACCGTTGTCTCTTCCACGCATTGCCGCGGAAAGCTGCGAGATTGGTGGCTACCACATTCCGAAGGGCTCGACT GTTTTGGTGAATGTATGGGCCATAGCTCGTGACCCCGATGTATGGACTAAGCCGCTTGAGTTTCGTCCCGAAAGGTTTCTTCCCGGTGGGGACAAGGCTG ATGTTGACGTTAAGGGAAATGATTTTGAGCTTATACCATTCGGTGCTGGGCGTAGGATTTGTGCAGGGATGAGTCTCGGGCTGCGTATGGTTCAGCTATT GACTGCAACTTTGATCCACGCCTTTGACTGGGATTTGGCCGATGGGTTGGTACCGGAGAAATTGAACATGGACGAGGCCTATGGTCTGACTTTACAACGT GCCGACCCCTTAATGGTGCACCCTAGGCCAAGGTTATCCCCAAAAGTCTACCGGACACCAAATTAA
AA sequence Show only first row Show all	>Potri.013G073300.1 pacid=42812182 polypeptide=Potri.013G073300.1.p locus=Potri.013G073300 ID=Potri.013G073300.1.v4.1 annot-version=v4.1 MSPLILYSALLAIFVYCLLQLRSLRDRHGKPLPPGPKPWPLVGNLPHLGPMPHHSMAALAKTYGPLMHLRFGFVDVVVAASASVAAQFLKVHDSNFSSRP PNSGAKHIAYNYQDLVFAPYGPRWRMLRKISSVHLFSAKSLDDFRHIRQEEVAVLTGALTRSGPTTPVNLGQLLNVCTANALGRVMLGRRVFGDGSGDGD PKADEFKSMVVEVMVLAGVFNIGDFVPALEWLDLQGVAAKMKKLHKRFDAFLTNIVEEHKTSSSTASVRSEKHTDLLSTLIALKEQQDVDGEEGKLTDTE IKALLLNMFTAGTDTSSSTVEWAIAELIRHPDILAQVKKELDSVVGRDRLVTELDLAQLTYLQAVVKETFRLHPSTPLSLPRIAAESCEIGGYHIPKGST VLVNVWAIARDPDVWTKPLEFRPERFLPGGDKADVDVKGNDFELIPFGAGRRICAGMSLGLRMVQLLTATLIHAFDWDLADGLVPEKLNMDEAYGLTLQR ADPLMVHPRPRLSPKVYRTPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.013G073300 [exp]	0	1	F3H1
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	1.41	0.9371
AT1G65060		4CL3	4-coumarate:CoA ligase 3 (.1.2...		Potri.019G049500 [exp]	3.00	0.9108	Ptr4CL4,4CL3.1
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.002G059200 [exp]	3.87	0.9064
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	4.47	0.9129
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Potri.010G213000 [exp]	5.91	0.8856	CHI.1
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.001G086700 [exp]	7.74	0.8731
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113900 [exp]	8.48	0.8927
AT1G12050			fumarylacetoacetase, putative ...		Potri.006G009200 [exp]	9.38	0.8506
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.001G113100 [exp]	10.81	0.8705	Pt-ANS.1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	12.00	0.8809	Pt-CHS.7

Compare expression of checked genes

Potri.013G073300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.