Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03560 567 / 0 unknown protein AT5G23490 276 / 3e-84 unknown protein AT5G08440 259 / 5e-78 unknown protein AT5G23510 188 / 2e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133700 [exp] 273 / 1e-83 AT5G23490 627 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005694 [exp] 573 / 0 AT3G03560 501 / 3e-174 unknown protein Lus10020297 [exp] 570 / 0 AT3G03560 489 / 3e-164 unknown protein Lus10019229 [exp] 260 / 2e-76 AT5G23490 667 / 0.0 unknown protein Lus10004286 [exp] 229 / 1e-66 AT5G23490 622 / 0.0 unknown protein Lus10020293 [exp] 103 / 6e-23 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10029154 [exp] 73 / 2e-15 AT5G23510 95 / 6e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G073400.2 pacid=42810715 polypeptide=Potri.013G073400.2.p locus=Potri.013G073400 ID=Potri.013G073400.2.v4.1 annot-version=v4.1 ATGCAAGAGCTTAACAACGAACGTGTTTGCCCTCAGAATTCTGATTCAATAAACAGGCATGATGGTGAGGCACATCTTGCTCCTAGGAAGTTGAAAACCA ATGGCAATCTCAATTATTTTGAAGACAGAGAGGCTATGGAGCTTCATTTACGATTAAGAGCACAAAAGGAGGAGATCCAGATTCTTCATGGACAAATTGC TGCTGCCTGTTTGAGGGAGCTTCAGTTGCTTGATGAGAAATATATTTTGGAGAGGAAATTTTCATACTTAAGAATGGCTATTGATGAGAAGCAAACTGAA GCAATTACTTCTGCTTCAAATGAGTTGGCTCGCAGAAAAGGTGATCTAGAAGAAAATTTACAATTGACCCATGATTTGAAGGTTGTGGATGATGATAGAT ATATTTTCGTTTCATCCTTGCTTGGCTTATTGGCTGAATATGGAATCCGGCCCCATGTTGTAAATGCCTCTGCTATTTCTAACAGTGTAAAGCTCCTGCA TGATCAATTGCAGTGGAATATTAGAACTTCACATGATATAATCAGAGAGATAGCATCTGTGCTGGGTTCTAAAAATGGAAGCAGTTCTCATGATATAGAC AATCCTGTTTCTGGCATCTTGACGGGTCAAACAACTCATCGATCCACGGTATTACTGGGTCACCATGGGACTTCTGCTTCTAATCACGATATAGCTGAAC GTCATCTGGAACTGAATGACAATATGCCAAAATTTGTACATGAGACAAATCTTGCTGATAAATCAAATTTAACACTTCATAATGGGATGCACCAGCTATT AAATAACAACAATTTCCCAGAGTTCTCATTTGATCCAGACAGGAAGGTAGCTGGCCCTCTTTCCAATAGTTTATTCGGAAAAAGTGATATGAATGCGAGA GCAGGACAGATGGCCAATGATGTGCCCCATCCTTCCAGCATGAATGATGAGATTGCTTCCTCTGTTTCAGATGATCTCCCTGGCATTGAGGGTTTCCAGA TTATCGGTGATGCTACTCCTGGAGAAAAACTCCTTGGATGTGGATTCCCTGTCCGTGGGACTTCTCTTTGCATGTTTCAGTGGGTTCATCATCTTGAGGA TGGCACTAGGCAGTACATTGAAGGAGCAACAAATCCAGAATATATTGTCACGGCTGATGATGTTGATAAGTTGATTGCTGTCGAGTGCATACCTATGGAT GACCAAGGCCGCCAGGGGGAACTGGTGAGGCTTTTTGCTAATGATCAGAACAAAATAAAATGTGACCCAGATATGCAACGGGAGATTGATACTTATATTT CTAAGGGTGAAGCCACATTTAGTGTTCTATTGCTGACGGACTCTTCTGAAAATTGGGATTCAACAACTCTAGTTTTGCGACGTTCTGGGTACCAAATTAA GAGCGATGGAAGGGGAAATGTAGTTATTGCGGAGAAATTTTCAAAGGATTTATCTATAAAAATCCCTGCTGGACTCTCAACGCAATTTGTTTTAACATGT TCCAATGGATCTTCTCATCCTCTCAGTACATATGATGTTCGAATGCGAGACACTCTTGTGTTGGCAATGAGAATGTTTCAGAGCAAGGCATTGGATGACA AGAGAAAAGGTAGAGCTTAG
AA sequence Show only first row Show all	>Potri.013G073400.2 pacid=42810715 polypeptide=Potri.013G073400.2.p locus=Potri.013G073400 ID=Potri.013G073400.2.v4.1 annot-version=v4.1 MQELNNERVCPQNSDSINRHDGEAHLAPRKLKTNGNLNYFEDREAMELHLRLRAQKEEIQILHGQIAAACLRELQLLDEKYILERKFSYLRMAIDEKQTE AITSASNELARRKGDLEENLQLTHDLKVVDDDRYIFVSSLLGLLAEYGIRPHVVNASAISNSVKLLHDQLQWNIRTSHDIIREIASVLGSKNGSSSHDID NPVSGILTGQTTHRSTVLLGHHGTSASNHDIAERHLELNDNMPKFVHETNLADKSNLTLHNGMHQLLNNNNFPEFSFDPDRKVAGPLSNSLFGKSDMNAR AGQMANDVPHPSSMNDEIASSVSDDLPGIEGFQIIGDATPGEKLLGCGFPVRGTSLCMFQWVHHLEDGTRQYIEGATNPEYIVTADDVDKLIAVECIPMD DQGRQGELVRLFANDQNKIKCDPDMQREIDTYISKGEATFSVLLLTDSSENWDSTTLVLRRSGYQIKSDGRGNVVIAEKFSKDLSIKIPAGLSTQFVLTC SNGSSHPLSTYDVRMRDTLVLAMRMFQSKALDDKRKGRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03560			unknown protein		Potri.013G073400 [exp]	0	1
AT2G46060			transmembrane protein-related ...		Potri.014G087300 [exp]	2.00	0.8376
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Potri.008G181500 [exp]	4.24	0.8291
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	4.89	0.8499
AT1G53903			Protein of unknown function (D...		Potri.003G071900 [exp]	7.21	0.7927
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	8.12	0.8563
AT2G20500			unknown protein		Potri.005G224200 [exp]	8.36	0.7790
AT3G06560		PAPS3	poly(A) polymerase 3 (.1)		Potri.008G102500 [exp]	9.16	0.8231
AT4G13020		MHK	Protein kinase superfamily pro...		Potri.002G247500 [exp]	11.74	0.7965	MHK.1
AT1G52343			unknown protein		Potri.003G055200 [exp]	13.74	0.8318
AT1G05030			Major facilitator superfamily ...		Potri.014G060800 [exp]	13.85	0.8234

Compare expression of checked genes

Potri.013G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.