Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17580 409 / 4e-137 Phototropic-responsive NPH3 family protein (.1) AT3G03510 332 / 3e-108 Phototropic-responsive NPH3 family protein (.1) AT1G30440 273 / 2e-83 Phototropic-responsive NPH3 family protein (.1) AT5G03250 241 / 6e-72 Phototropic-responsive NPH3 family protein (.1) AT5G66560 232 / 7e-68 Phototropic-responsive NPH3 family protein (.1) AT5G13600 227 / 8e-67 Phototropic-responsive NPH3 family protein (.1) AT3G50840 219 / 5e-64 Phototropic-responsive NPH3 family protein (.1) AT5G67385 204 / 3e-58 Phototropic-responsive NPH3 family protein (.1) AT5G48800 204 / 6e-58 Phototropic-responsive NPH3 family protein (.1) AT2G30520 191 / 2e-53 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357100 [exp] 290 / 5e-90 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 286 / 9e-89 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 271 / 4e-83 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 268 / 7e-82 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 246 / 2e-73 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 236 / 9e-70 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 229 / 5e-67 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 228 / 7e-67 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 225 / 9e-66 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023274 [exp] 277 / 4e-85 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 277 / 7e-85 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 266 / 2e-81 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 259 / 3e-78 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 259 / 3e-78 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 249 / 2e-74 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 249 / 3e-74 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 248 / 6e-74 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 243 / 3e-72 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 238 / 4e-70 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.013G073700.1 pacid=42811657 polypeptide=Potri.013G073700.1.p locus=Potri.013G073700 ID=Potri.013G073700.1.v4.1 annot-version=v4.1 ATGGCCAGTAGAGATGTATCATCTTGGTTGTCCAAGTCTCCATCCCCATCAGAAGTTCAGCTCCATGTACATGGCATGCCTTTCAGTGTAGACAAAGATC TTCTGTCAGCAAGATCAGCCAAAATAGCTGCCCTGCTCAAAGAAAACCCCCCAGAAAAGCTGGCTTTTCTTCTCCGAGATATTCCTGCTGATCCAGAAAC CTTTGAACTTGTTGCTAGATTCTGCCATGGGTATGAACTGATTTTGTCCACAGAGAATGTAATACCACTCATTTCTCTTGCTTACTACTTGGAGATGACT GAAAGTCACAGCGACAATAATCTGCTGGACAAGACTCTTGCTTTTTTTGAAGATAAAGTCCTTCCTAGCTGGAATGAAACCATCAAGGCTCTTCGGTCCG CGAGCAGTATCATTCAACAAGTACTGCATTCAGGTTTGGTTGATGCATGTTTAGAATCACTCATTTACAAAGCATTGGCCGATCCCCGGCTTCTTGGAGA ACCAATCAAGAATTCAACATGCAATGAGGATAGTGAGGATGAGGAGGTCTTTAAACCAAATGCGAGACGAAAACTTTTTTCTCCTGATTGGAAATCAGAG GATTTGACTACACTGTCCCTCCAGTTATATAATCCCCTCATACAAGCAATGAATCAGCATGGAGTCCCACCAGAATATGTGGCAGCATCTCTTTGTCAAT ATGTAAAGAAGTGGGCCAATTCAGGAGAGAATGAGACAATTTACAAGAGGGGAGTGATTGAAGCAGTGGAAAGGCTTCTGCCTCCTGAAAAAGGAATTCT TCCTTGCACGTTGTTGTTTGAAATGCTCAGGCTTGCGATTTGTCTGGAATGCAGCAATGATTGTAGAAGTGGTTTTGAGATTAGGATCGGGAAGCAATTA GACCAGGCAGAAGTGAAAGACCTCTTAATACCGTCTCAAGGTTATTCCAAGGAAATCCAATATGATATTGAGTGTGTGAGGAGGATTTTGAAACATTTCT ATGCCAACTACAGCAGCACTGATGTTTCTGGTATAATCTCGGTGGCAGAACTCATTGAAGAATTTTTGATGGAGGTTGCGAGTGACATAGATTTGAGGAT AGACACGTTTGTTTCTTTAGCTGAGATGTCATTGGCAGCATCATTAGGAACACAGAGAAATTCCGATGGAATATACAGGGCCATCAACATTTACCTGGAC AAGCATAGATATTTGACAGAGCTGGAAAGAGAGGAGGTATGTAGGGTGTTAGATTGCCAAAAAATGTCACCTGAAGCCTGTGAACATGCAGCGAAGAACG AAAGGTTGCCAGTTAGGTTTGTGGTGCAGGTGTTGTTTGTGGCGCAGTTGCAGTTGCGAGACACAATCACAAAGGAGGTGCAGGTTTTTGATGATAAATT GAGAAGAGAGGTGGTGGAGGATGAGGAGAATGAAGTGAAGATGGGTTTTGACGAGGAAGAGGTGAGGGTTGAAATGGAGAAAATGAGCATCAAAGTGATG GAGCTCGAGAGAGAGTGCTGCATAATGAGGAAAGAAATAGAACATGGTTGCACCCATCAGAAATCAAAAAAGGGCAAAGTTAGCATGTGGAGAGAAATGA AGAGAAAATTGGGGTGTGTGAGTAGCACTCATGATTGTAACTGCCAAGTCAAGAAGAAGAAGAAGAAATACTGA
AA sequence Show only first row Show all	>Potri.013G073700.1 pacid=42811657 polypeptide=Potri.013G073700.1.p locus=Potri.013G073700 ID=Potri.013G073700.1.v4.1 annot-version=v4.1 MASRDVSSWLSKSPSPSEVQLHVHGMPFSVDKDLLSARSAKIAALLKENPPEKLAFLLRDIPADPETFELVARFCHGYELILSTENVIPLISLAYYLEMT ESHSDNNLLDKTLAFFEDKVLPSWNETIKALRSASSIIQQVLHSGLVDACLESLIYKALADPRLLGEPIKNSTCNEDSEDEEVFKPNARRKLFSPDWKSE DLTTLSLQLYNPLIQAMNQHGVPPEYVAASLCQYVKKWANSGENETIYKRGVIEAVERLLPPEKGILPCTLLFEMLRLAICLECSNDCRSGFEIRIGKQL DQAEVKDLLIPSQGYSKEIQYDIECVRRILKHFYANYSSTDVSGIISVAELIEEFLMEVASDIDLRIDTFVSLAEMSLAASLGTQRNSDGIYRAINIYLD KHRYLTELEREEVCRVLDCQKMSPEACEHAAKNERLPVRFVVQVLFVAQLQLRDTITKEVQVFDDKLRREVVEDEENEVKMGFDEEEVRVEMEKMSIKVM ELERECCIMRKEIEHGCTHQKSKKGKVSMWREMKRKLGCVSSTHDCNCQVKKKKKKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17580			Phototropic-responsive NPH3 fa...		Potri.013G073700 [exp]	0	1
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	7.74	0.6340
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.013G023100 [exp]	23.10	0.5774
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.018G137400 [exp]	31.17	0.5458
					Potri.008G009201 [exp]	42.63	0.5495
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	47.32	0.5420
AT3G26390			unknown protein		Potri.006G180700 [exp]	56.49	0.5324
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	66.03	0.5332
AT5G05800			unknown protein		Potri.004G230401 [exp]	171.42	0.4691
AT3G09590			CAP (Cysteine-rich secretory p...		Potri.006G215600 [exp]	221.37	0.4483
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Potri.003G176400 [exp]	240.62	0.4414

Compare expression of checked genes

Potri.013G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.