Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17570 456 / 7e-163 TatD related DNase (.1) AT3G03500 373 / 6e-131 TatD related DNase (.1) AT3G52390 62 / 7e-11 TatD related DNase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068400 [exp] 63 / 3e-11 AT3G52390 566 / 0.0 TatD related DNase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021077 [exp] 475 / 2e-170 AT5G17570 447 / 3e-159 TatD related DNase (.1) Lus10017234 [exp] 424 / 3e-150 AT5G17570 397 / 7e-140 TatD related DNase (.1) Lus10013590 [exp] 81 / 3e-17 AT3G52390 524 / 0.0 TatD related DNase (.1.2) Lus10021262 [exp] 80 / 7e-17 AT3G52390 521 / 0.0 TatD related DNase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [poplar] [flax] Amidohydrolase PF01026 [poplar] [flax] TatD_DNase TatD related DNase
Representative CDS sequence Show only first row Show all	>Potri.013G073800.2 pacid=42811929 polypeptide=Potri.013G073800.2.p locus=Potri.013G073800 ID=Potri.013G073800.2.v4.1 annot-version=v4.1 ATGACCATGAAACTATTTGATGCACACTGTCACCTGCAAGACCCAAGAATCCTTAACAAGACACCTCAACTCATTGCCACTGCCCTTGATACTGGCGTAG TCCGTTTTGCTGTCAATGGGGTTTCTGAGAAAGACTGGAACTTGGTTAAAGAGATGGGTGAGAGCTATCCGTCTGTGATCCCATGCTTTGGTCTCCACCC CTGGTTTATTGAGGAGAGGACTCCTAATTGGTTCAACACACTTAAAGAGTTCTTTCAGATCACACCCTCTGCTGCTGTTGGAGAGATTGGTTTGGACAAG GGTTCACATGGAAAGAAGATTGATTTCAATGATCAGGTTCAAGTATTCCGGAGACAGCTTGAACTCGCAAAAGAGTTGAATAGACCAGTATCTGTCCATT GTGTTCATGCTTTTGGTGATCTTCTTGAGATAATGAAGAGTACAGGACCTTTCCCAGCTGGTGTCATTCTCCATTCTTTCCTGGGTTCTGCTGAGATGGT TCCTGAGTTTGCCAAGCTTGGTGCTTACTTTTCGTTTTCTGGTTTTCTCATGTCCATGAAAAAAGAGAAGGCAACAAAAATGCTGAAAGCGGTATCTTCT GATAGGATTTTGTTGGAAACAGATGCACCTGATGCCCTGCCTAATGGAAAGTTTGGTTCCCTTTTTCTGGTTGATGGAGGTATTTTTCATCCTGAAGGAG AAAATTCTTCTTCAAATGCTGACAGTCTCCATGATGGTGATTCCCATCCTTCAAAAGATGCATCGGCATTGCCAAGAGAAACACCTAATCATCCTGCAAA TATACACAATGTCTTAAGTTACGTTGCATCCTTGCTGGACATCACCAAACAAGAACTTGCAGAACTGAGCTATGCAAATGCAGTACGGTTGTTCTCTTAT GAAGGTTCCAAGTTATTAGAAAAATAG
AA sequence Show only first row Show all	>Potri.013G073800.2 pacid=42811929 polypeptide=Potri.013G073800.2.p locus=Potri.013G073800 ID=Potri.013G073800.2.v4.1 annot-version=v4.1 MTMKLFDAHCHLQDPRILNKTPQLIATALDTGVVRFAVNGVSEKDWNLVKEMGESYPSVIPCFGLHPWFIEERTPNWFNTLKEFFQITPSAAVGEIGLDK GSHGKKIDFNDQVQVFRRQLELAKELNRPVSVHCVHAFGDLLEIMKSTGPFPAGVILHSFLGSAEMVPEFAKLGAYFSFSGFLMSMKKEKATKMLKAVSS DRILLETDAPDALPNGKFGSLFLVDGGIFHPEGENSSSNADSLHDGDSHPSKDASALPRETPNHPANIHNVLSYVASLLDITKQELAELSYANAVRLFSY EGSKLLEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	0	1
AT2G25100			Polynucleotidyl transferase, r...		Potri.008G019800 [exp]	1.41	0.8570
AT3G23490		CYN	cyanase (.1)		Potri.010G068200 [exp]	2.00	0.8269	Pt-CYN.1
					Potri.017G119700 [exp]	3.87	0.8271
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	4.24	0.8289
AT1G28100			unknown protein		Potri.003G163800 [exp]	9.48	0.8110
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	10.39	0.7968
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Potri.008G152800 [exp]	11.31	0.7995
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	11.83	0.8076
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.014G179000 [exp]	12.00	0.7670	CHY1.1
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.004G232600 [exp]	12.48	0.7226	Pt-ATGSTZ2.1

Compare expression of checked genes

Potri.013G073800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.